Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01179 ATGGACCATTCGAATACTGTTCCTCCTTCTCCATCTTCTTCTTCTTCTCCTTCTTCTTCTTTTTCCTCTCATCGCGTGGAGCGAATGATAAACTCGAACCACTACAAGTCCCCTTCGAGAACAATCTGCTCCGACAGGTTCATACCCCCTTACTCTTCCCTCCTCCGCACGGCGCTATTCGGACCCGATGCACCGCTCACGCCCGATAAGACCAGCCACAACATTTTTCGTTACAAGACGGAGACTCGCCAGTCCATGCACTCTCTCTCCCCCTTCATCCACAATGACGACGTAGTTTCCACTGTTAATCATACCCCTGTTAAGCCTCCCAGGAAAATTCCCCGTTCACCATACAAGGTTCTGGATGCGCCTGCGTTGCAAGATGATTTTTATTTGAACCTCGTGGATTGGTCTTCGCTCAATGTTTTGGCTGTTGGTCTTGGTAACTGCGTTTATTTGTGGAATGCTTGTAGCAGCAAGGTAACTAAATTGTGTGACTTGGGGAATGATGATTGCGTTTGTTCTGTTGGGTGGGCTCAGCGCGGTACACTCCTTGCTGTTGGAACTAATAGTGGTCAAGTTCAGATTTGGGATGCATCTCAATGCAAGATGATAAGAACTATGGAAGGTCATCGTTTACGAGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTATCTTCTGGTGGCAAGGATAAAAATATTTATCAAAGAGATATACGTGCACAAGATGATTTTGTCAGTAAACTGTCCGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCTGGAGGAAATGATAACAGATTGCTTGTTTGGAATCAACACTCAACTCAACCCGTCCTGAAGTACTGTGAACACACGGCAGCTGTTAAAGCAATAGCGTGGTCTCCTCATGTTCATGGACTCCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGCCTGGTCTAAGAATGTTAATGAACTGGTAAGCACACATGGCTACTCCCAGAACCAGATAATAGTTTGGAGATACCCCACCATGTCTAAGCTCGCAACTCTTACAGGCCATACTTATAGAGTTCTCTATCTTGCCATCTCTCCAGATGGGCAGACTATTGTCACTGGTGCTGGAGATGAAACACTTAGGTTTTGGAACGTATTCCCTTCCTTAAAATCACAGAATACTGAGAGTGAAATTGGAGCATTATCTTTTGGGAGAACAATTATTAGGTGA 1311 0.4531 MDHSNTVPPSPSSSSSPSSSFSSHRVERMINSNHYKSPSRTICSDRFIPPYSSLLRTALFGPDAPLTPDKTSHNIFRYKTETRQSMHSLSPFIHNDDVVSTVNHTPVKPPRKIPRSPYKVLDAPALQDDFYLNLVDWSSLNVLAVGLGNCVYLWNACSSKVTKLCDLGNDDCVCSVGWAQRGTLLAVGTNSGQVQIWDASQCKMIRTMEGHRLRVGALAWSSSLLSSGGKDKNIYQRDIRAQDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTQPVLKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLAWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQNTESEIGALSFGRTIIR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01179 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 290 IPR001680 GO:0005515
Arst5g01179 436 Gene3D - 107 415 IPR015943 GO:0005515
Arst5g01179 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Arst5g01179 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 412 - -
Arst5g01179 436 SUPERFAMILY WD40 repeat-like 116 417 IPR036322 GO:0005515
Arst5g01179 436 Pfam Anaphase-promoting complex subunit 4 WD40 domain 161 222 IPR024977 -
Arst5g01179 436 SMART WD40_4 114 155 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 328 369 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 158 198 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 284 326 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 372 411 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 201 238 IPR001680 GO:0005515
Arst5g01179 436 SMART WD40_4 242 281 IPR001680 GO:0005515
Arst5g01179 436 ProSitePatterns Trp-Asp (WD) repeats signature. 398 412 IPR019775 -
Arst5g01179 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 412 IPR001680 GO:0005515
Arst5g01179 436 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 22 424 IPR033010 GO:0010997|GO:0097027|GO:1904668
Arst5g01179 436 FunFam FIZZY-related 2 isoform 1 114 414 - -
Arst5g01179 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 281 - -
Arst5g01179 436 MobiDBLite consensus disorder prediction 1 25 - -
Arst5g01179 436 Pfam WD domain, G-beta repeat 375 411 IPR001680 GO:0005515
Arst5g01179 436 Pfam WD domain, G-beta repeat 246 281 IPR001680 GO:0005515
Arst5g01179 436 Pfam WD domain, G-beta repeat 286 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01179 Arst-Chr5 12247748 12252380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g01179 184 423 Miscellaneous Gene Families AT5G08390 20.492 2.46e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01179 K03364 - qsa:O6P43_024251 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01179 5 12247748 12252380 Arst5g01179 5 12247748 12252380 ECH