Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01172 ATGGATGATAATCTCTTCAATGACCAAGTGGTGCCATCTGGTCGCATAACAGGAATAAAGTTTGGCCTTTTAACTGAGGAAGATATAGAGAATGCCTCTACTTTGGAAATACAAGCAGCCGGGCAGGTTAACTGTTCTGATTTGGGACTTCCAAACCCAACTCATGAGTGCACCACTTGTGGTTCTAAAGATAGAAATTTCTGTGAAGGCCATTATGGGGTAATTAAATTTAACATTACCATACCCCATCCTTATTTCCTATCGGAGATTGCACAACTTTTGAACAAAATCTGCCCTGCTTGTAAATCTATTCGAGAAGAATTACGGAGCAAGGGTGCTCAATTACTCTTTGGAACCAAACGGTCTAATGGTTGTAAATATTGTTCTGGAAATAGTTATCCAAAAATGAAATTCAGAGTTTCGTCCAATGATCTCTTCCGAAGAACTGCGATTATTGTTGAAATAAATGAGAGGTCTTTAAACTCAAAGAAACATTTGGGACGAAGAGTACCTGAACATTTTTGGGATTTCATCCCCTCAGATCCTCAGCAAGAAGAAAGTTGCATAAAACCAAACAGAAGGGCTTTATCCCCTTATCAGGTTCTTTGTTTGCTGAGCGATGTTGATCAAGACTTTGTTCAAAAATTTGTTCCACAAACGGAGTTACTTGGTCTTAATTGCTTCCCGGTGACGCCAAACTGTCATCGCGTGACAGAAGTCATGCATGCATTTTCTAATGCAAATCGATTGAGTTTTGACAACAGGACCAGAGCTTGTAAGAAATTGGTTGATTTCCGGGGTACCGCTACTGAGTTAATTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTACATCCTGATAAAACACCAGCAAACAGTTTTGCTGATATCCAGCAAAAGAAAAATGCTGAAAATGCGTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACGTAATGATAGTTCATTCCGTACGGTAGTAGTTGGTGATCCAGACCTTGAGCCTGGTGAAATTGGTATACCTTGTCAAATCGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAACAAGCATAATTTGGAAAAATTGCTTTATTGTGGCGAATTACGCATGATAGAGAAGGGAAACATAAAGGTCCGCAGAAAAGGTAGTCCTATTGTCCTGTACAAAAAAGAAGACCTTCAAATAGGAGACTTGTTTTATCGGCCACTTGGTGATGGTGATAAAGTATTGATAAATAGGCCACCTTCCATACATCAACACTCAATGATTGCTCTCTCGGTTAAAGTCCTACCAATATCTTCCGCGGTGTCTATCAACCCACTTTGTTGTTCCCCACTCCGTGGGGATTTTGACGGTGATTGTCTTCATGGGTATATTCCAGATTCAGTTGCTGCAAGAGTTGAGCTAAGTGAGCTAGTTTCTTTGGAGAAGCAATTGATAAATGGGCAGAGTGGTAAAAATCTGCTTTCACTCTCTCAGGATAGCTTGACGGCTGCCCATTTGCTGATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAGATGTTTTGCGCTCATAATTTAACGCCACCTGCTATTGTTAAAGCTCCTTCAAGTAATACCTCATTTTGGACTGGCAAGCAATTATTCAGCATGCTGTTGCCTTCTAATCTTGACTATTCTTTTCCTTCAAATGGTGTTTCTGTCAGAAATGGCGAGCTTTTATCTTCTTCAGAGGCTTCTGGTTGGTTACGTGATTCTGACTGTAATCTCTTCCAGAGTCTTGTTGAACAATGTCAAGGGGACACTCTAGACTTTTTGTATGCTGCACAGAAAGTTCTTTGTGAGTGGTTATCTATGACAGGTTTCACAGTTTCACTTGCTGACCTGTACCTTGCTTCTGACTCCTATGCACGGAAAAATATGATGGAGGAAATCTCCTTTGGCTTGCAAGAAGCAGAACATTCGTGTAACTTCAAACAGTTGTTAGTAGATTCCTGTTGTGATTTTCTGGCAGGTAATGTTAAAGGAAATGAAAAGACTATGATTGATGTGGTTCGTATGAACTATGAAAGGCAAATATCAGCTGCTCTCAGTCAAGAGTCAGTTGATGCTTTCAGACAAGTTTTTCGTAATATTCAAGGTCTAGCTGACAGATATGGAGAGAAGGACAATTCATTCCTTGCTATGATCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTGCAACATTCCATGTGCCTTGGCCTACAACATTCTTTGGTACGTTTATCATTCAGAATTCCCCATCAACTCTCATGTGCTGCTTGGAATAGTGAAAAGGGGATTGATTCTGTTCAAAAGTTTTCTAGTACTCCTAAATCTGTTCAGTCTTATATCCCATATGCTGTGGTTGAAGGATCGTTCCTGTCTGGGTTGAATCCACTTGAATGTTTTGTTCATTCGGTCACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGAACATTATCTCGTAGACTAATGTTCTTCATGCGGGATATCTGTGGTGCATATGATGGAACGGTTAGGAATTTGTATGGTAATCAGATTGTACAGTTTTATTATGATACTGATGAGGATTCGCCTATGGGTAGCTGCTCCCAAGAGACTACTATAGGTGGTGAACCAGTTGGAGCACTTGCTGCTTGTGCGATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATAAGTCTTCTTGAAACATCACCTCTGTTGAATTTAAAGAGTGTTCTGGAGTGTGGTTCCAAGAAAAAAAGTGGTGACCAGACTGTCTCTTTATTTTTGTCTGCGAAATTTCGTGACCGGAGATATGGGTTTGAGTATGCAGCATTTGATGTTAAGAATTATTTGGAAAGAATAATGTTCTCAGATATTGTTTCTACTGTCATGATAATTTTCACTTCACAGTCTAGAAACCAAGAAAAGTACAGCCCTTGGGTTTGCCATTTTCATCTAGACAAGGAAATTGTTCGCAGAAGAAACCTGAAATTGTGTTCTATCATTAACTCTCTTAAGAAGAGATGTGGGATTCTAAGGAAAGAATCCAAAGTATGTTTTGCCAGCATGGAAATATCACTCAACAGGAAGTGTTCAGCTGCATACATGTCTCAGGAAGGAAAAATTACTTCTACAGATAAGGGAATGGAGGGTGATGATTGCATCACTGTCACCCTTGTTGAATACTTAAACAATTCCATACCACTTGATGATGTTCGGGACTTTATGCTACCTTCCCTTCTTGGAACTACTGTAAAAGGATTTCCGGAGATCACGAAGGTTGATATTCTGTGGAATAGTCTTCCGAAATCAGCAAATTTCAGAAGTGGCTGTTCCGGGGAACTTTACTTGAGGATTACTATGTCAAGTGATAATAGCAGTGGAAGATTCTGGGGTGTTCTTATAAATCATTGTCTACCGATAATGCATATGATTGATTGGACAAGAAGTCTCCCAGATAACATAAATCATTTCTGCTCAGCCTATGGAATTGATGCAGGGTGGAAATATTTTCTCCAGAATTTGGCATCTGCAACAACAGATACTGGCAAGACAGTCCTTCACAAGCATTTGCGTCTTGTTGCTGATAGCTTGTCAGTTAGTGGAGAGTTTGTAGGGTTAAATGGAAAGGGCATGGCACGACAGAGACAACATGCATCTGTTTCATCTCCCTTTGTACAAGCATGCTTTTCTAACCCTGGTAGTTGCTTTATAAAATCTGCTAAGGCTGGAGTCAAAGATGATCTGCAAGGCATCCTCGACGCATTGGCATGGGGAAACTGTCCACCCTTAGGGACAAGCGGACAATTTGAGATTATATATTCTCCGAAGGGACAAGAGCTTGCTAAATCTGGAGATGTTTATAAACTGCTAAAGGCCAACTTTGACCAGCAGATTGAAAAGAGCAGTCTCCCTACTGCTTACAAATATTCAGCTGAGAAATGGAGTTCTAATGTTCGGCCCAAAAATGGTGGGTTTGGCTTGAAAGTGCACAAACAGTTGAAAAGCCTTATTAGAAATTTTGTGACTGTGAACGATATTTACAAACTGACTTCTGCATCAAGGAACATACTGAACAAGTATTCAATTGATGAACAACTAAATGAGAAGGACCTATTTACCATGCTGAAGGTTCTGCATTTTCATCCGCATAGAGATGAAAAGTATGGCTCTGGACCACAGCACATCAAGGTTGGATGGCACCCTGAACATAAGACTACACGCTGCTTTTTCATAGAACGAACTGATGGGACTGTGGAGGATTTTTCATACCGGAAATGCATTCTTGGTGCTCTTGAGATTGTTGCCCCAGATAAGGCAAAGACCCAGAAGAAAAAATGGAAGAAAGATGAATAA 4398 0.4045 MDDNLFNDQVVPSGRITGIKFGLLTEEDIENASTLEIQAAGQVNCSDLGLPNPTHECTTCGSKDRNFCEGHYGVIKFNITIPHPYFLSEIAQLLNKICPACKSIREELRSKGAQLLFGTKRSNGCKYCSGNSYPKMKFRVSSNDLFRRTAIIVEINERSLNSKKHLGRRVPEHFWDFIPSDPQQEESCIKPNRRALSPYQVLCLLSDVDQDFVQKFVPQTELLGLNCFPVTPNCHRVTEVMHAFSNANRLSFDNRTRACKKLVDFRGTATELISRVLDCLRISKLHPDKTPANSFADIQQKKNAENACNSSGLRWMKDVVLGKRNDSSFRTVVVGDPDLEPGEIGIPCQIAESLQVSEYVNKHNLEKLLYCGELRMIEKGNIKVRRKGSPIVLYKKEDLQIGDLFYRPLGDGDKVLINRPPSIHQHSMIALSVKVLPISSAVSINPLCCSPLRGDFDGDCLHGYIPDSVAARVELSELVSLEKQLINGQSGKNLLSLSQDSLTAAHLLMEDGVLLNVYQMQQLQMFCAHNLTPPAIVKAPSSNTSFWTGKQLFSMLLPSNLDYSFPSNGVSVRNGELLSSSEASGWLRDSDCNLFQSLVEQCQGDTLDFLYAAQKVLCEWLSMTGFTVSLADLYLASDSYARKNMMEEISFGLQEAEHSCNFKQLLVDSCCDFLAGNVKGNEKTMIDVVRMNYERQISAALSQESVDAFRQVFRNIQGLADRYGEKDNSFLAMIKAGSKGNLLKLVQHSMCLGLQHSLVRLSFRIPHQLSCAAWNSEKGIDSVQKFSSTPKSVQSYIPYAVVEGSFLSGLNPLECFVHSVTNRDSSFSDNADLPGTLSRRLMFFMRDICGAYDGTVRNLYGNQIVQFYYDTDEDSPMGSCSQETTIGGEPVGALAACAISEAAYSALGQPISLLETSPLLNLKSVLECGSKKKSGDQTVSLFLSAKFRDRRYGFEYAAFDVKNYLERIMFSDIVSTVMIIFTSQSRNQEKYSPWVCHFHLDKEIVRRRNLKLCSIINSLKKRCGILRKESKVCFASMEISLNRKCSAAYMSQEGKITSTDKGMEGDDCITVTLVEYLNNSIPLDDVRDFMLPSLLGTTVKGFPEITKVDILWNSLPKSANFRSGCSGELYLRITMSSDNSSGRFWGVLINHCLPIMHMIDWTRSLPDNINHFCSAYGIDAGWKYFLQNLASATTDTGKTVLHKHLRLVADSLSVSGEFVGLNGKGMARQRQHASVSSPFVQACFSNPGSCFIKSAKAGVKDDLQGILDALAWGNCPPLGTSGQFEIIYSPKGQELAKSGDVYKLLKANFDQQIEKSSLPTAYKYSAEKWSSNVRPKNGGFGLKVHKQLKSLIRNFVTVNDIYKLTSASRNILNKYSIDEQLNEKDLFTMLKVLHFHPHRDEKYGSGPQHIKVGWHPEHKTTRCFFIERTDGTVEDFSYRKCILGALEIVAPDKAKTQKKKWKKDE 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01172 1465 Gene3D - 318 488 - -
Arst5g01172 1465 Gene3D RNA polymerase ii 355 407 - -
Arst5g01172 1465 Pfam RNA polymerase Rpb1, domain 2 322 480 IPR000722 GO:0003677|GO:0003899|GO:0006351
Arst5g01172 1465 FunFam DNA-directed RNA polymerase subunit 489 627 - -
Arst5g01172 1465 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1286 IPR045867 GO:0003899|GO:0006351
Arst5g01172 1465 Pfam RNA polymerase Rpb1, domain 4 697 780 IPR007083 GO:0003677|GO:0003899|GO:0006351
Arst5g01172 1465 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 12 1289 - -
Arst5g01172 1465 CDD RNAP_IV_RPD1_N 24 857 IPR040403 -
Arst5g01172 1465 Gene3D - 847 886 - -
Arst5g01172 1465 Gene3D RNA polymerase Rpb1, domain 3 489 635 IPR042102 -
Arst5g01172 1465 SMART rpolaneu7 221 509 IPR006592 GO:0003677|GO:0003899|GO:0006351
Arst5g01172 1465 Pfam RNA polymerase Rpb1, domain 3 485 633 IPR007066 GO:0003677|GO:0003899|GO:0006351
Arst5g01172 1465 Gene3D - 638 810 IPR038120 -
Arst5g01172 1465 Gene3D - 1353 1444 - -
Arst5g01172 1465 Gene3D RNA polymerase II, clamp domain 7 117 IPR044893 -
Arst5g01172 1465 Pfam Protein of unknown function (DUF3223) 1370 1442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g01172 Arst-Chr5 12148176 12161122 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01172 K16250 - gmx:100796185 2063.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01172 5 12148176 12161122 Arst5g01172 5 12148176 12161122 ECH