Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g01001 ATGTGGCGGTGCGTCGCTCGTCGACTTCGTGTTCCTCCACCCTCCGACGGATCCACACCTAATCACTCTCTTAGATCTCACTTTTCTAGATTCTTCTCTAGCGGAGGGAACTCGTCGTACACGGTGGTGGATCATAAGTATGATGCTGTTGTGGTAGGTGCTGGTGGCGCTGGGTTGAGAGCTGCTATTGGACTTTCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCAACTCGTTCTCACACTGTTGCAGCTCAGGGCGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAAGATGCCATCCAGTAATTTGGTGGTCAAAGCTTGAACTTTGGAAAGGGTGGTCAGGCCTACCGATGTGCATGTGCCGCTGATCGTACTGGACATGCTTTGTTGCACACTCTTTATGGCCAGGCTATGAGACATAATACACAGTTTTTTGTTGAGTATTTTGCATTGGACCTTATAATGAATAATGACGGAAGTTGCCAAGGAGTAATTGCCTTGAATTTGGAGGACGGAACATTACATCGGTTTCAAGCTGCTTCAACAATTTTGGCAACAGGGGGTTATGGTAGAGCATATTTTTCCGCAACCTCTGCACATACATGTACTGGAGATGGTAATGCCATGGTTGCACGTGCTGGACTCCCTCTCGAGGATTTGGAGTTTGTGCAGTTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGTTCCCGGGGTGAAGGTGGAATTCTAAGAAATAGTGAAGGTGAGCGATTTATGGAACGATATGCTCCCACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCTTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATATCGGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCCACTGTGCATTATAACATGGGTGGTATACCTACAAACTATCATGGAGAGGTGGTTACCATTAAAGGTGACGACCCAGATGCAGTAGTTCCTGGATTGATGGCTGCTGGAGAAGCAGCTTGTGCGTCGGTGCATGGAGCCAATAGGCTTGGTGCCAATTCGCTTCTGGATATTGTAGTTTTTGGCAGAGCTTGTGCAAATAGGGTTGCAGAAATCCATAGGCCAGGAGAAAAACAAAAACCTTTAGAGAGTGACGCTGGTCAGAAAACAATTGCCTGGCTGGACAAGTTGAGAAATTCAAATGGTTCATTGCCAACAGCGAAAATTAGGTTAAATATGCAACGGATAATGCAAAATAATGCTGCTGTATTCCGTACACAAGACACATTAGCAGAAGGTTGCCAATTAATTGATAAAGCGTGGGAGAGCTTCCATGATGTCAAGTTGGAGGACCGGAGTTTAATTTGGAACTCCGACCTGATTGAGACTATTGAGTTGGAAAACCTTTTGATTAATGCCTGCATCACAATGCACTCAGCTGAAGCCAGGAAAGAAAGCAGAGGAGCTCATGCCCGTGAGGATTTCACGAAAAGAGATGATGAGAACTGGATGAAACACACTTTGGGGTATTGGGAGAAGGAGAAGGTCCGGTTGGACTACAGGCCGGTGCACATGAATACACTAGATGATGAGGTTGAGTCATTCCCTCCCAAAGCTCGTGTGTATTAA 1803 0.4603 MWRCVARRLRVPPPSDGSTPNHSLRSHFSRFFSSGGNSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQXFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNNDGSCQGVIALNLEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLESDAGQKTIAWLDKLRNSNGSLPTAKIRLNMQRIMQNNAAVFRTQDTLAEGCQLIDKAWESFHDVKLEDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEKEKVRLDYRPVHMNTLDDEVESFPPKARVY 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g01001 600 PRINTS Pyridine nucleotide disulphide reductase class-I signature 207 216 - -
Arst5g01001 600 PRINTS Pyridine nucleotide disulphide reductase class-I signature 48 70 - -
Arst5g01001 600 Gene3D - 440 550 - -
Arst5g01001 600 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 255 358 - -
Arst5g01001 600 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 127 600 IPR014006 GO:0016627|GO:0022900|GO:0050660
Arst5g01001 600 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 459 600 IPR037099 GO:0016491
Arst5g01001 600 Gene3D succinate dehydrogenase protein domain 551 600 - -
Arst5g01001 600 PIRSF SDHA_APRA_LASPO 37 114 - -
Arst5g01001 600 PIRSF SDHA_APRA_LASPO 140 590 - -
Arst5g01001 600 Gene3D - 48 423 IPR036188 -
Arst5g01001 600 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 552 600 - -
Arst5g01001 600 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 245 363 IPR027477 -
Arst5g01001 600 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 359 424 - -
Arst5g01001 600 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 439 555 - -
Arst5g01001 600 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Arst5g01001 600 SUPERFAMILY FAD/NAD(P)-binding domain 40 436 IPR036188 -
Arst5g01001 600 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 269 374 IPR027477 -
Arst5g01001 600 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 126 600 IPR030664 -
Arst5g01001 600 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 126 600 IPR030664 -
Arst5g01001 600 NCBIfam succinate dehydrogenase flavoprotein subunit 126 600 IPR011281 GO:0006099|GO:0016627|GO:0050660
Arst5g01001 600 Pfam Fumarate reductase flavoprotein C-term 469 600 IPR015939 GO:0016491
Arst5g01001 600 Pfam FAD binding domain 48 127 IPR003953 -
Arst5g01001 600 Pfam FAD binding domain 128 413 IPR003953 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g01001 K00234 - qsa:O6P43_024753 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g01001 5 9715085 9720558 Arst5g01001 5 9715085 9720558 ECH