Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00941 ATGATCATGCGGTTCAGGATCTTGTTCTTCTGCAAGGTTAACCTCGCCAATAGGTTAACCCTGCAATTGCAACAAGTTCGTTCCTATGCCCGCAATCCCTTTCCCAACAGAGTCTCTCACTACCTCTACCGTGCCAAGCTCATTGACTCCATTCGACTCTCTCTGCGCTCGAACAACCCCAACTCACTCTCCACTCTCCTGAACGATCGTCTTCTTGATTCCTTCGTTATCACTCAGGCCCTGCGTTCTGCTCCTTCCGCCGACTCTGCTATCTCTTTTCTCAATGCCCTTCAGGAAAGTCCCCGTTTTTCGCATACCCAACACACCCTTCATGCTCTTGCTACTGTTCTTGCCAGGTCTGGTCGAACCTCTGAGCTCAACTCCCTAATTGATACTATTCGTGCCAAACAGTTCGGCAATGTTAAGATCAGCTTCATGAATCTCATGAACTGGCATGCTGCTGCTGGGGACCTTGATTCTGTTCTTGCTGTTTGGGATGAGTATAGGCTTGCCAACAACCGTGTCTGCACTGAGTCTTATAACATTGTCATGGCTCTTTCTGCGCAAATGGGGAAGGACTATGAAGTTGTAAGATCATTCTATAGGATGATTGATGAAGGATTGCTTCCTAATTGCAGAAGCTATAGTATAGTAATTGAGCACCTTGTAAAATCTGGAAAAGTATTGGAAGCATTGGAGGTTTTTAAAATGCTGCCTTCAATGAGGATCAAACGCACTTTGAAACAGTACACTGTTCTGATTGACTGTTTCATTGCCTGCAAACGGTTTGATGAAGTGAAAACCTTGCTTGAGGAAATGCAAATTGATGGAATACTGCCAAGTCGAGCAATGTGTTTGTTACTTCAGAAGATGCAGGAGGAAGGATTTCTCAAGGAGAGTGACTTATTGTTCAGGGAAACTCTGCAAGATGAAAGAATAAAGAATGTGATATATTCTGTAGAAAGATGTGTTGATGATGAGGAAGAGGATGAGGATGAAAATGTAAGCCATGCTAGTCAATGTGATCATACTGATGAGGTTCAGTTAAAACCATGGATGGATCCACATGCTTTGGCTAGTGCCTTACAGAATTGGAGTCCTGATGAGGTATCGGCACTTGAGGGTGCAAACTTTGTGTGGACAACCAGGTTGGTCTGCAAGATACTTAGAAGTTTCAAGTCACCAGAAACCGCATGGAATTTCTTCTGTTGGGTTGCTTGTCAACCGGGTTTCACGCATGATATATACACAGTACAAAGAATTATGACCCTTCTAGCACGCCATGGTCGTACTGAATTGGTTGATAGACTCATCTCAAAAATCAGAATGGAGGAAATGAGACTGCCATTCAGCACCATCAGGCTAATCATCGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTAAAGGTTTTCAATGATGTTCGAATACTTTGTGGGCCCATATCAAAATCTAATCTGATGCTTTTGTATTCTTCTCTCTTAAGAACATTAACCAAATGTGGAAGGAATTCCGATGCCCTGGATATACTCGATCAGATGATCTTGAATGATATTTGCCCTGATATGCAAACCTTTTCAGGACTAATGCACTATTTTTCGAACCTTGGGGATATAAAAACAGTGCAGAGACTCTTTGCAATGGTTAGGCAGAGTGGTGTGGAGCCAGATGCTTATCTCTATAAGGTGCTTATCCAAGGTTACTGCAAATCAAAAAGAGCTGCACTAGCATGGAGGCTATTTGAAGATATGAGGAATTCAGGTCTGATGCCTGATTCTGCCACAAAAGAATTGCTAGTGAAAAGCCTCTGGAAAGAAGGGAGACGAAGAGAAGCTGCAGCTATTGAAGAGAGTTGTGAGGAAGTAAATGTGGTACTTCCGCATGCATTGCGTGGTCATGAATGGACTGTCAGCTCTGCTGATCTCTCAAAAGTTTATAATCTTTATTCCGATTGTTTTGCTTCAAATGGTGGCTAG 1980 0.4288 MIMRFRILFFCKVNLANRLTLQLQQVRSYARNPFPNRVSHYLYRAKLIDSIRLSLRSNNPNSLSTLLNDRLLDSFVITQALRSAPSADSAISFLNALQESPRFSHTQHTLHALATVLARSGRTSELNSLIDTIRAKQFGNVKISFMNLMNWHAAAGDLDSVLAVWDEYRLANNRVCTESYNIVMALSAQMGKDYEVVRSFYRMIDEGLLPNCRSYSIVIEHLVKSGKVLEALEVFKMLPSMRIKRTLKQYTVLIDCFIACKRFDEVKTLLEEMQIDGILPSRAMCLLLQKMQEEGFLKESDLLFRETLQDERIKNVIYSVERCVDDEEEDEDENVSHASQCDHTDEVQLKPWMDPHALASALQNWSPDEVSALEGANFVWTTRLVCKILRSFKSPETAWNFFCWVACQPGFTHDIYTVQRIMTLLARHGRTELVDRLISKIRMEEMRLPFSTIRLIIDFYGISKNADAALKVFNDVRILCGPISKSNLMLLYSSLLRTLTKCGRNSDALDILDQMILNDICPDMQTFSGLMHYFSNLGDIKTVQRLFAMVRQSGVEPDAYLYKVLIQGYCKSKRAALAWRLFEDMRNSGLMPDSATKELLVKSLWKEGRRREAAAIEESCEEVNVVLPHALRGHEWTVSSADLSKVYNLYSDCFASNGG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00941 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Arst5g00941 659 Pfam PPR repeat 250 278 IPR002885 -
Arst5g00941 659 Pfam PPR repeat 214 241 IPR002885 -
Arst5g00941 659 Pfam PPR repeat 492 518 IPR002885 -
Arst5g00941 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Arst5g00941 659 Gene3D Tetratricopeptide repeat domain 77 356 IPR011990 GO:0005515
Arst5g00941 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Arst5g00941 659 NCBIfam pentatricopeptide repeat 214 244 IPR002885 -
Arst5g00941 659 NCBIfam pentatricopeptide repeat 561 593 IPR002885 -
Arst5g00941 659 NCBIfam pentatricopeptide repeat 492 523 IPR002885 -
Arst5g00941 659 NCBIfam pentatricopeptide repeat 250 281 IPR002885 -
Arst5g00941 659 Pfam PPR repeat family 557 604 IPR002885 -
Arst5g00941 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Arst5g00941 659 PANTHER OS01G0167750 PROTEIN 20 656 IPR044175 -
Arst5g00941 659 PANTHER OS01G0167750 PROTEIN 20 656 IPR044175 -
Arst5g00941 659 Gene3D Tetratricopeptide repeat domain 487 653 IPR011990 GO:0005515
Arst5g00941 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Arst5g00941 659 Gene3D Tetratricopeptide repeat domain 364 482 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00941 121 633 Glycosyltransferase AT1G05670 20.943 1.73e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00941 - - gmx:100779372 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00941 5 8958564 8960954 Arst5g00941 5 8958564 8960954 ECH