Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00890 ATGGTATCCGAATCGGAGCTCATCGGGCGCCTCCGCGAGTTCCTACGTAGCTCCGACCTAAACACCACCACAACCGCCACCGTCCGCCGCCAGCTCGAGGCCGATTTCGGAATCGATTTGTCCGATAGGAAGGCATTCATTCGGGAACAGGTGGACTTGTTCCTTCAGAGCGAGCACAACCATCCACAGGAACAAGAACAAGAGGAACCGCAACCGGCAGATGAAGATGACGAAGAAGAAAAAGATGAAGAGACCGATAAACCCGAACGAAGCCGGGGTTCTGATTCCAAGGGAGAAACGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGAAGACGAAGAGGAACAGAAATCCAAAAATGCTCGGAATGGGAAGAAGAATAAAGGACGATCTAACAAGGAAGGTAGTGAGGTTGTAAAAAAACGAGGTGGCGGTTTTTGTAAACTATGTAGCCTGTCTCCACAACTTCAGAAATTCACTGGAGCACCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAACAATTTGCAAGATGCAAACAATAGGCGAAATATCATTTGTGATGAACCATTGCGAGCTATTTTTGGTGTCGATTCCATCAACATGTTCCAAATGAATAAAGCACTAACAAAGCATATCTGGCCATTAGATTCAGATGACGTTATCCCGGTGAAGACAGCACCAAAGGAAAAGGAAAAGGAGAAGGAAAAGGAAAAGCAGAAGAAACATGAGAGAGAAGGCGAATCAGAGGAACCAAAGAAAAAGGAAAAACGTCAGAAGGGAGGGAAATCAGGTTTTCTTGCACCTCTTCAACTATCTGATGCCCTTGTAAATTTCCTTGGTACTGGAGAAAGTGAGTTATCAAGAGCTGAGGTTATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATATGTGACAAGAAGCTGAAAGAGCTCTTCGATCTTGACACCTTCACTGGCTTCACTGTTACCAAACTGCTGGCTCCTCATTTTATAAAGGCAGAGCAATAA 1071 0.4426 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQSEHNHPQEQEQEEPQPADEDDEEEKDEETDKPERSRGSDSKGETEEEEEEEEEDDDEDEEEQKSKNARNGKKNKGRSNKEGSEVVKKRGGGFCKLCSLSPQLQKFTGAPEMARTEVVKQLWAYIRENNLQDANNRRNIICDEPLRAIFGVDSINMFQMNKALTKHIWPLDSDDVIPVKTAPKEKEKEKEKEKQKKHEREGESEEPKKKEKRQKGGKSGFLAPLQLSDALVNFLGTGESELSRAEVIKRMWDYIKGNNLQDPSDKRKIICDKKLKELFDLDTFTGFTVTKLLAPHFIKAEQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00890 356 Coils Coil 97 117 - -
Arst5g00890 356 Gene3D SWIB/MDM2 domain 142 230 IPR036885 -
Arst5g00890 356 Pfam SWIB/MDM2 domain 151 222 IPR003121 -
Arst5g00890 356 Pfam SWIB/MDM2 domain 278 351 IPR003121 -
Arst5g00890 356 ProSiteProfiles SWIB/MDM2 domain profile. 274 353 IPR003121 -
Arst5g00890 356 MobiDBLite consensus disorder prediction 117 140 - -
Arst5g00890 356 MobiDBLite consensus disorder prediction 57 140 - -
Arst5g00890 356 Gene3D - 1 59 - -
Arst5g00890 356 Gene3D SWIB/MDM2 domain 269 356 IPR036885 -
Arst5g00890 356 Pfam DEK C terminal domain 2 55 IPR014876 -
Arst5g00890 356 SUPERFAMILY SWIB/MDM2 domain 272 355 IPR036885 -
Arst5g00890 356 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 227 - -
Arst5g00890 356 SUPERFAMILY SWIB/MDM2 domain 144 226 IPR036885 -
Arst5g00890 356 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Arst5g00890 356 MobiDBLite consensus disorder prediction 99 116 - -
Arst5g00890 356 SMART swib_2 148 227 IPR019835 -
Arst5g00890 356 SMART swib_2 275 356 IPR019835 -
Arst5g00890 356 MobiDBLite consensus disorder prediction 69 84 - -
Arst5g00890 356 MobiDBLite consensus disorder prediction 234 271 - -
Arst5g00890 356 FunFam Upstream activation factor subunit 142 230 - -
Arst5g00890 356 CDD SWIB-MDM2_like 279 351 - -
Arst5g00890 356 CDD SWIB-MDM2_like 152 222 - -
Arst5g00890 356 MobiDBLite consensus disorder prediction 234 274 - -
Arst5g00890 356 ProSiteProfiles SWIB/MDM2 domain profile. 147 224 IPR003121 -
Arst5g00890 356 SUPERFAMILY DEK C-terminal domain 3 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00890 Arst-Chr5 8373771 8378479 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Arst5g00890 SWIB 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00890 K15223 - gmx:100786835 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00890 5 8373771 8378479 Arst5g00890 5 8373771 8378479 ECH