Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00599 ATGTACGGTAACAGAGTGGCGGACGGTGCGGGCGTTGATCGCAGGAAGCGAATCAACGACGTTCTCGACAAGCACTTGCACCGATCCTCACCCTCCACTTCAACCTCCGCCTCTACTAGGCCCATCAAAGCCCAAATCCAGGCCCAAATCCAAGCCAACAACTCCGACGCCACACTCGAGGAATCGGAAACCGACACCGGGGGATCGGACGTTAGCGCCTCCGACGACGGGGAAGACACCTCGTGGATCGCGTGGTTCTGCAGCCTCAGAGGGAACGAGTTCTTTTGCGAGGTCGATGATGATTACATTCAGGACGATTTTAACCTTTGTGGTTTGAGCAGCCAAGTTCCTTATTACGATTATGCCCTTGACTTGATTCTTGACGTTGACTCCTCCCACGGAGACATCTTTACAGAAGAACAAAATGAGTTGATTGAATCCGCCGCAGAGATGCTTTATGGTCTCATTCATGCCCGCTACATTTTAACAGGCAGAGGAATGGCTGCCATGCTGGACAAGTACAAGAATTATGACTTTGGTAGGTGTCCAAGAGTTTACTGCTCAGGGCAACCGTGCCTTCCGGTGGGTCAGTCCGACATCCCTAGGTCGAGCACTGTAAAGATATATTGCCCCAGGTGTGAAGACATTTACTACCCGCGATCCAAGTATCAAGTTCCTTAA 681 0.5125 MYGNRVADGAGVDRRKRINDVLDKHLHRSSPSTSTSASTRPIKAQIQAQIQANNSDATLEESETDTGGSDVSASDDGEDTSWIAWFCSLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVDSSHGDIFTEEQNELIESAAEMLYGLIHARYILTGRGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQVP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00599 226 Gene3D - 179 225 - -
Arst5g00599 226 Pfam Casein kinase II regulatory subunit 81 223 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 FunFam Casein kinase II subunit beta 179 225 - -
Arst5g00599 226 FunFam Casein kinase II subunit beta 74 178 - -
Arst5g00599 226 MobiDBLite consensus disorder prediction 21 76 - -
Arst5g00599 226 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 74 178 IPR016149 GO:0005956|GO:0019887
Arst5g00599 226 ProSitePatterns Casein kinase II regulatory subunit signature. 182 213 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 SMART CK_II_beta_2 81 224 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 MobiDBLite consensus disorder prediction 28 76 - -
Arst5g00599 226 SUPERFAMILY Casein kinase II beta subunit 79 223 IPR035991 GO:0005956|GO:0019887
Arst5g00599 226 PRINTS Casein kinase II regulatory subunit family signature 200 221 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 PRINTS Casein kinase II regulatory subunit family signature 81 97 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 PRINTS Casein kinase II regulatory subunit family signature 98 112 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 PRINTS Casein kinase II regulatory subunit family signature 178 199 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 PRINTS Casein kinase II regulatory subunit family signature 153 174 IPR000704 GO:0005956|GO:0019887
Arst5g00599 226 PANTHER CASEIN KINASE II SUBUNIT BETA 60 224 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00599 Arst-Chr5 4930160 4932219 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00599 K03115 - gmx:100793573 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00599 5 4930160 4932219 Arst5g00599 5 4930160 4932219 ECH
Arst5g00599 5 4930160 4932219 Arst1g01741 1 31796072 31799702 PCT
Arst1g01754 1 32070381 32074771 Arst5g00599 5 4930160 4932219 PCT