Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00596 ATGGGTTGTTTTTGCTCCAAAGTAAGTAAACAAATTGCCGTGGAAGAAGAAGATCCAATGAGTCTTTCGAAGCAAACAGTTTTTAGTGTTAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAAACGTATTAGTGGATCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTATATTGGCAATTTTCAATAACAAGGAAAAAGACAATCTCTTTGCAAGTCGAATCTTTGATTTATTTGATGTAAAGAAGAAAGGAGTTATCGACTTTGGCGATTTTGTTCGAGCACTCAATGTTTTCCACCCACATACACCTCAAAAAGTCAAGATAGATTTTTCATTTAGACTCTACGATTTGGACAAATCAGGTTTTATAGAGCGCCATGAGGTAAAGGAAATGATACTTGCACTTCTCACTGAATCTGAAATGAAGTTACCGGATGAGATGATAGAAACAATTATAAACAAGACTTTCTTGGCGGCAGACCCAAACCAAGATGGGAAAATAGACGAGAATGAATGGGAGGCTTTTGTTACAAAAAATCCATCATTGCTGAAAATAATGACATTACCATACCTGAGTGACATAACAACAACATTCCCAAGTTTCGTATTTCACTCTAAGGTTGATGACAACGTTGGTGCTTGA 648 0.3627 MGCFCSKVSKQIAVEEEDPMSLSKQTVFSVSEVEALFELFKRISGSVIDDGLISKEEFILAIFNNKEKDNLFASRIFDLFDVKKKGVIDFGDFVRALNVFHPHTPQKVKIDFSFRLYDLDKSGFIERHEVKEMILALLTESEMKLPDEMIETIINKTFLAADPNQDGKIDENEWEAFVTKNPSLLKIMTLPYLSDITTTFPSFVFHSKVDDNVGA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00596 215 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Arst5g00596 215 SMART efh_1 109 137 IPR002048 GO:0005509
Arst5g00596 215 SMART efh_1 72 100 IPR002048 GO:0005509
Arst5g00596 215 SMART efh_1 153 181 IPR002048 GO:0005509
Arst5g00596 215 PANTHER CALCINEURIN B 2 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Arst5g00596 215 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Arst5g00596 215 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Arst5g00596 215 Gene3D - 18 212 - -
Arst5g00596 215 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Arst5g00596 215 Pfam EF-hand domain pair 109 177 IPR002048 GO:0005509
Arst5g00596 215 SUPERFAMILY EF-hand 22 204 IPR011992 -
Arst5g00596 215 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Arst5g00596 215 FunFam calcineurin B-like protein 3 18 211 - -
Arst5g00596 215 PRINTS Recoverin family signature 14 28 - -
Arst5g00596 215 PRINTS Recoverin family signature 123 141 - -
Arst5g00596 215 PRINTS Recoverin family signature 76 97 - -
Arst5g00596 215 PRINTS Recoverin family signature 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00596 Arst-Chr5 4910297 4912667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00596 1 211 EF-hand Containing Proteins AT4G17615 69.668 2.10e-105 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00596 K06268 - rvl:131307807 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00596 5 4910297 4912667 Arst5g00596 5 4910297 4912667 ECH
Arst5g00596 5 4910297 4912667 Arst1g01758 1 32230670 32235313 PCT