Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00358 ATGGAACTTGTCACTGTTCCGCCGCCAACAGCCACTCAATCCAGCTACCATCACCACCACGGCAGCAGCATCTCCACCATTACATATTCTCCTCACAACCCCAAACTCAAGCTTCCTCTCCTTCACACCTCCCCTGTCATCTCTTCACAAACCACTACTACTTGCAGCGACAGCATTAAGAGGAGGAAGAAGAAGAGGAAGAAAAATGGGTCTTCAACCTTAGATATATTGTGCTTAATGGAAGCTCTCTACAATCCCATACCCATTGACATCTACACCTCTCTTGTTAAAGAGTGCACTGTTTCTGGGGACCCACATACTGCTATTCACTTGAACAATCACATAATCCACAGTGGGATTAAGCCTCCGTTGCCCTTCATCAATCGGATTCTCATCATGCTTGTGTCATGTGGCTTGTTGGACAATGCGCGCTATGTGTTTGATTTAATGTCTGTTAGGGACTTCAACACTTGGGCAACCATGTTTGTTGCTTATTATGATAATGCTGATTATGCGGACGTAGCTAGAGTATTTGTCAGCATGGTTGAAGATTTGGGTATGGAAGATTCGGAATTCCCTGCGTGGATGTGGGGTTGCCTTCTCAAGTCATGTGCCTGCAGTGCGAACTTCCATCTCGGTATGCAAGCTCATGGATGTTTGTTGAAGTTAGGAGCTTGTACTGACGTGGTTCTAAGTAGCTCTTTGATCAGTTTCTATGGGAAATTCAAGCGCCTGGAAGATGCGAATGCTGTATTCAACCACGCTTCGCGACACAACAACATGACTTGGTCGGCTAAGATTGTAGGCGGATGCAGGGAAAAGCAATTCTCTGAGGTTCTCTGCGACTTCAAGGAGATGGGAAGACAAGGGGTGAAGAAGGATAGCTTCACATTTTCCAGTGTTCTCAAGGCATGTGGGAAGATGCTGAATCGCGAACAATGTGGCGAACAGGTCCATGCTAATGCCATCAAATTTGGGATGGTCTCAGATAAATATGTTAAGTGTAGTTTGATAGCTATGTATGGAAGAAGTGGTTTGCTGAGAGATGCAGAACAAGTGTTTGAAATGAAGGGGAATGAAAGAAATGTTGATTGTTGGAATGCAATGGTTATGGGTTACATGCATAATGGTATGCACATTGAAGCTTTGAGGTTTCTGTATCAGATGAAGGAAGCTGGAATGCAGCCCCAAGAAGATCTGCTTAATGAAGTGAGAATTGCTTGTGGCAGTGTTAAATACTAA 1242 0.4444 MELVTVPPPTATQSSYHHHHGSSISTITYSPHNPKLKLPLLHTSPVISSQTTTTCSDSIKRRKKKRKKNGSSTLDILCLMEALYNPIPIDIYTSLVKECTVSGDPHTAIHLNNHIIHSGIKPPLPFINRILIMLVSCGLLDNARYVFDLMSVRDFNTWATMFVAYYDNADYADVARVFVSMVEDLGMEDSEFPAWMWGCLLKSCACSANFHLGMQAHGCLLKLGACTDVVLSSSLISFYGKFKRLEDANAVFNHASRHNNMTWSAKIVGGCREKQFSEVLCDFKEMGRQGVKKDSFTFSSVLKACGKMLNREQCGEQVHANAIKFGMVSDKYVKCSLIAMYGRSGLLRDAEQVFEMKGNERNVDCWNAMVMGYMHNGMHIEALRFLYQMKEAGMQPQEDLLNEVRIACGSVKY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00358 413 NCBIfam pentatricopeptide repeat 365 396 IPR002885 -
Arst5g00358 413 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 409 IPR046960 GO:0003723|GO:0009451
Arst5g00358 413 Pfam PPR repeat 336 355 IPR002885 -
Arst5g00358 413 Pfam PPR repeat 365 393 IPR002885 -
Arst5g00358 413 MobiDBLite consensus disorder prediction 7 24 - -
Arst5g00358 413 Gene3D Tetratricopeptide repeat domain 189 312 IPR011990 GO:0005515
Arst5g00358 413 Gene3D Tetratricopeptide repeat domain 41 188 IPR011990 GO:0005515
Arst5g00358 413 Gene3D Tetratricopeptide repeat domain 313 412 IPR011990 GO:0005515
Arst5g00358 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Arst5g00358 413 MobiDBLite consensus disorder prediction 1 24 - -
Arst5g00358 413 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 314 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00358 Arst-Chr5 3051231 3052680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00358 200 412 Glycoside Hydrolase AT3G49170 28.194 1.05e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00358 - - gmx:100778405 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00358 5 3051231 3052680 Arst5g00358 5 3051231 3052680 ECH