Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00340 ATGAAAACATGCCACGTCATCCCTAATTTGAGTCACTTGTACGAAGCATTGAAAAGTTCCGACCGTGCCGGAGCATCCGCCACGGCCAAGAAGGCGGCGTCCGGTGGAGCTACCACCGCGACTAAGGCGGCGAAGAAGGCGCCGAGCAGGCCGCGCAACAACGTGGGGATACAGAAGGTAGTGCCGGTGTCTTCCGAGCTCGGAAGCTTCCTCGGTGCTTCGGAGGTGTCCCGAACTCACGCTGTGAAGAGAGTGTGGGAGTACATCAAGCTGCAGAATCTTCAGAATCCTAGTAATAAGAAGGAGATCTTTTGTGATGACAAGTTGAAGACTATTTTTGATGGGAAAGACAAGGTCGGGTTCACAGAGATTGCAAGATTGCTAGCTACCCATTTTGTAAAATCAAGCTAG 411 0.5158 MKTCHVIPNLSHLYEALKSSDRAGASATAKKAASGGATTATKAAKKAPSRPRNNVGIQKVVPVSSELGSFLGASEVSRTHAVKRVWEYIKLQNLQNPSNKKEIFCDDKLKTIFDGKDKVGFTEIARLLATHFVKSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00340 136 Pfam SWIB/MDM2 domain 61 132 IPR003121 -
Arst5g00340 136 Gene3D SWIB/MDM2 domain 52 136 IPR036885 -
Arst5g00340 136 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 26 133 - -
Arst5g00340 136 SMART swib_2 57 136 IPR019835 -
Arst5g00340 136 MobiDBLite consensus disorder prediction 28 54 - -
Arst5g00340 136 CDD SWIB-MDM2_like 61 132 - -
Arst5g00340 136 ProSiteProfiles SWIB/MDM2 domain profile. 56 134 IPR003121 -
Arst5g00340 136 SUPERFAMILY SWIB/MDM2 domain 52 134 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00340 Arst-Chr5 2899526 2900817 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Arst5g00340 SWIB 4.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00340 - - adu:107487278 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00340 5 2899526 2900817 Arst5g00340 5 2899526 2900817 ECH