Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00328 ATGGCGACTGAATCTGCCGTGAAAGGACCTCCGTCGAATAGTCCCGGTGATTCGTACATAGGAAGCTTCATAAGCTTGCTTTCCAAGAGCGAGATTCGTTACGAGGGCATTCTCTATTTCCTCAACGTTCATGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAATTCCTCCAAGTGAGAAGGTTTATGAATACATTCTTTTTCGAGGAAATGACATTAAGAATTTGCAGATCAAGTCTCCCCCAACATCTGCCAAATCAGAAGAGCAGATACATAATGATCCAGCTATTATACAATCACAGCTAAACTCTACAGCAGCCTCATTTGGTGGGAGAAATTCGACAGAATCTATTCAAAGGCAGGATAGTGTTGATATGTTTAGTAAAGCTATCCCTATTGGGTTGCTGTCATCTCAGTCTGCAACTCAGCTAAACCCTTCAGATCAGTCTGCTGCTACTCAAATTGCTGGTCATCCATCCTTTTCCACATCAATGTATTTGAACGGACACAGTGGAATATCAAGCAATAACTCTAATTCTCTGCTACATCCCGGTCTTCTTCAATTGCCGTCAATGGTAGCATCACCTTTACCTTACCAAAGTTGGATGCAAACTCCGGAAACTGAGGTTCCTAACAAAGTGGGATGGACACCTTTATCAGACTATGGTCTTCCTGTATCTTCTACTAATACTTCTCTTGTAAATCAAACTCGCTCTCCATCTCCTAACCCTTTACAAATTTCTGATTCACTTGATGTTAATTCCCTCTTACCTACTAAGGCACCCATGCCATATCCTACGCCCATGACTTTTGATGGATCAAACATACATTCATTTTCTTCACCTCTCCAAGAAATAAATTCTATTGATAACCAAATATCTGAAAAAATTTGCCCTGACCCAAGGTCAATTTATCTTGGACATGCCTTTCATCATCCTTCTTCATTTGTAGGTTACAGTTCAGGCCCCTTGCCAATACCTCCATCTTTGTTAACTCCAGATCAATTTGCACATCCCAGAGAAAATGTATCTCCTTTAACACAGAATTTGACCCCTAATCAGAAAGATATGGGTTCTTTGATTCCAACATCTTCTAATTCCTCTGTATTGATGCCTTCTATAGTGTCTCAAGCACCACTACTGCCATTACCAACTTTAGTGCCAAAGCCTCACTCAATAGCTTCCCAGTTCAATGAAGAGTTTGATTTTGAGGCCATGAATGAAAAATTCAATAAAGATGAAGTATGGGGTTCTCTTGGAAAGGCAACTATGAACATAGAAGGAGTGGATGACAATGCTTCTTCTATCAGTTCAGGCGACAAAGACAGTCAAGGGAAGACACCAAGTCCCAAGTCTGCATACAAGAAAGATGACTTTTTTGACACAATTTCCTGCAACTCTGCGAGTAGTGGAAGGAATGGACAACACCGTTTATCTGAGAGAATAAAACTGGATACCGAGACGTTTGGCAATTTCCAACACAGGCCTAATTTTGGCTATGGTGGTGGTCGCGGTATGAATTTCAGAGGCTCAAATAATTGGGGAAGAGGTTATGGTTATGGTAGGAGAGGACGTGGCCCAAACTTTCATCGTTTCTAG 1635 0.4141 MATESAVKGPPSNSPGDSYIGSFISLLSKSEIRYEGILYFLNVHDSTIGLKNVRSYGTEGRRKDGPQIPPSEKVYEYILFRGNDIKNLQIKSPPTSAKSEEQIHNDPAIIQSQLNSTAASFGGRNSTESIQRQDSVDMFSKAIPIGLLSSQSATQLNPSDQSAATQIAGHPSFSTSMYLNGHSGISSNNSNSLLHPGLLQLPSMVASPLPYQSWMQTPETEVPNKVGWTPLSDYGLPVSSTNTSLVNQTRSPSPNPLQISDSLDVNSLLPTKAPMPYPTPMTFDGSNIHSFSSPLQEINSIDNQISEKICPDPRSIYLGHAFHHPSSFVGYSSGPLPIPPSLLTPDQFAHPRENVSPLTQNLTPNQKDMGSLIPTSSNSSVLMPSIVSQAPLLPLPTLVPKPHSIASQFNEEFDFEAMNEKFNKDEVWGSLGKATMNIEGVDDNASSISSGDKDSQGKTPSPKSAYKKDDFFDTISCNSASSGRNGQHRLSERIKLDTETFGNFQHRPNFGYGGGRGMNFRGSNNWGRGYGYGRRGRGPNFHRF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00328 544 SMART LSM14_2 13 114 IPR025609 -
Arst5g00328 544 Gene3D - 11 94 - -
Arst5g00328 544 Pfam Scd6-like Sm domain 19 92 IPR025609 -
Arst5g00328 544 CDD LSm14_N 16 90 IPR025609 -
Arst5g00328 544 MobiDBLite consensus disorder prediction 442 467 - -
Arst5g00328 544 MobiDBLite consensus disorder prediction 442 462 - -
Arst5g00328 544 SMART FDF_2 407 505 IPR019050 -
Arst5g00328 544 SUPERFAMILY Sm-like ribonucleoproteins 18 94 IPR010920 -
Arst5g00328 544 Pfam FDF domain 408 503 IPR019050 -
Arst5g00328 544 PANTHER SCD6 PROTEIN-RELATED 14 539 - -
Arst5g00328 544 ProSiteProfiles Sm domain profile. 11 94 IPR047575 GO:0003723
Arst5g00328 544 ProSiteProfiles FFD box profile. 464 479 IPR025761 -
Arst5g00328 544 ProSiteProfiles DFDF domain profile. 401 437 IPR025762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00328 Arst-Chr5 2778938 2782854 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00328 K18749 - gmx:102669894 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00328 5 2778938 2782854 Arst5g00328 5 2778938 2782854 ECH