Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03249 ATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTAATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAGGAGTTTTATGTTTATTTCGATGGACCCAATGAAAGTCCTTATCATGGTGGTGTATGGAAAGTAAGAGTTGAGCTACCTGATGCTTATCCTTATAAATCTCCTTCTATAGGATTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGGTCGGTTTGTCTGGATGTTATCAACCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAAGTGTTCCTACCACAGCTTCTTCTGTATCCCAATCCATCAGACCCTTTAAATGGAGAAGCTGCCGCTTTACTGATGCGAGATCGAGCTAGTTATGAACAAAGGGTTAAGGAGTACTGTGAGAAGTATGCTAAAGCTGAAGATGTAGGAGCTGCACCAGAAGAGAAATCAAGTGATGATGAGGAAATGAGTGAAGATGAATATGATTCAAGTGATGAACAGGTTGCTGGTAAAGCAGATCCTTAG 555 0.4126 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVYFDGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQRVKEYCEKYAKAEDVGAAPEEKSSDDEEMSEDEYDSSDEQVAGKADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03249 184 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Arst4g03249 184 SMART ubc_7 4 148 - -
Arst4g03249 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Arst4g03249 184 CDD UBCc 7 143 IPR000608 -
Arst4g03249 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Arst4g03249 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Arst4g03249 184 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Arst4g03249 184 MobiDBLite consensus disorder prediction 149 184 - -
Arst4g03249 184 Coils Coil 132 152 - -
Arst4g03249 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Arst4g03249 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03249 Arst-Chr4 109548582 109551899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03249 26 178 Miscellaneous Gene Families AT1G17280 21.765 4.34e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03249 K10576 - gmx:100804969 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03249 4 109548582 109551899 Arst4g03249 4 109548582 109551899 ECH
Arst4g03249 4 109548582 109551899 Arst2g00083 2 615062 618351 PCT