Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01550 ATGGCAGCCTCTTTGGCCTGTCTTGGTGGAAGTGGTTTATCAGTGCAAAGCGGAAAAATAACTCTTGACTTCAACGGGAGATATCTCTTCTCATCTCGTAGACTTTCATCAGCGAATAAAGAACCAAGGGTCAAATCTGTAAATGCATCCTTGGAACAAAGGAAGCATGAAGGGAGGAGGGAGTTTCTTAAATTGTTGAATGTGGGAGTTGGGCTACCTGCATTATTGGGAAGTGGGAAAGCTTTCGCCGATGAACAAGGGGTTTCCTCCTCCAGAATGTCTTATTCTAGATTTCTTGAGTATTTAGACAAAGATAGAGTTAAAAAAGTGGATTTGTTTGAGAACGGAACAATAGCTGTTGCAGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAACGAGTGCGAGTTCAACTTCCAGGACTTAGCCAAGAGCTTCTACAGAAATTCAGGGAAAAGAATATTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCGGGCAATCTATTGTTTAACCTGATTGGGAATCTTGCTTTCCCTCTAATATTGATCGGAGGATTGTTCCTTCTTTCAAGAAGATCATCTGGTGGGATGGGAGGTCCCGGTGGGCCTGGATTTCCTCTTGCTTTTGGTCAATCTAAGGCTAAGTTTCAAATGGAACCTAATACCGGAGTGACATTTGATGATGTTGCTGGGGTGGATGAAGCTAAACAGGACTTTATGGAGGTAGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATTCCGAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACCGGTAAGACGCTGTTAGCCAAGGCTATTGCAGGGGAAGCAGGTGTCCCATTCTTCTCCATCTCAGGTTCCGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGTGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTTTTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGAGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTCGAGGGTAATACCGGTATCATTGTCATTGCAGCAACTAACAGAGCTGACATTCTTGACTCTGCTTTATTGAGACCTGGACGGTTTGATAGACAGGTGACAGTTGATGTTCCAGACATTCGTGGAAGGACTGAGATCCTCAAGGTTCATGGCAGCAACAAAAAGTTCGAAGGGGATGTTTCTCTCGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCAGATCTTGCAAATCTAATGAATGAAGCTGCTATATTGGCCGGTAGGCGTGGGAAGACGGCAATTTCTTCGAAAGAGATTGATGATTCAATTGATAGAATTGTTGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTCTAGTGGCATATCATGAAGTTGGGCATGCCATTTGCGGAACTTTGACTCCTGGTCATGACCCTGTACAAAAGGTGACGCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTCATCCCTAATGACGACCCAACTCTAATTTCCAAACAGCAACTCTTCGCGAGAATTGTTGGTGGACTAGGCGGTAGAGCTGCAGAGGAAGTTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTTACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGATGCCTCGGCTCAAAGCGCAGATGTCATTATGAGAATGATGGCTAGAAACTCGATGTCAGAAAAGCTCGCCGAAGACATTGACGCCGCTATCAAGAGGCTCTCAGATGAAGCATATGAAATTGCATTGGAACATATAAGGAACAACCGTGAAGCAATTGATAAGATTGTGGATGTCCTTCTGGAGAAGGAGACAATGACCGGCGATGAATTCCGATCTCTGCTATCCGAGTTTGTCGAAATTCCGGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTCACTGTTTGA 2073 0.4525 MAASLACLGGSGLSVQSGKITLDFNGRYLFSSRRLSSANKEPRVKSVNASLEQRKHEGRREFLKLLNVGVGLPALLGSGKAFADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAVAEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEESGNLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEGDVSLEVIAMRTPGFSGADLANLMNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPNDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDASAQSADVIMRMMARNSMSEKLAEDIDAAIKRLSDEAYEIALEHIRNNREAIDKIVDVLLEKETMTGDEFRSLLSEFVEIPAENRVPPSTPSPVTV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01550 690 FunFam ATP-dependent zinc metalloprotease FtsH 398 472 - -
Arst4g01550 690 Gene3D - 215 397 IPR027417 -
Arst4g01550 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 467 IPR027417 -
Arst4g01550 690 Gene3D Peptidase M41 477 673 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Arst4g01550 690 PANTHER METALLOPROTEASE M41 FTSH 45 672 - -
Arst4g01550 690 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 27 679 IPR005936 GO:0004176|GO:0004222|GO:0016020
Arst4g01550 690 FunFam ATP-dependent zinc metalloprotease FTSH chloroplastic 87 167 - -
Arst4g01550 690 NCBIfam ATP-dependent zinc metalloprotease FtsH 87 663 IPR005936 GO:0004176|GO:0004222|GO:0016020
Arst4g01550 690 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Arst4g01550 690 Gene3D - 87 168 - -
Arst4g01550 690 Pfam AAA+ lid domain 419 462 IPR041569 -
Arst4g01550 690 FunFam ATP-dependent zinc metalloprotease FTSH 6 chloroplastic 505 677 - -
Arst4g01550 690 FunFam ATP-dependent zinc metalloprotease FtsH 214 396 - -
Arst4g01550 690 Gene3D - 398 476 - -
Arst4g01550 690 CDD RecA-like_FtsH 225 395 - -
Arst4g01550 690 Pfam Peptidase family M41 478 667 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Arst4g01550 690 SUPERFAMILY FtsH protease domain-like 479 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Arst4g01550 690 SMART AAA_5 260 399 IPR003593 GO:0016887
Arst4g01550 690 Pfam ATPase family associated with various cellular activities (AAA) 264 395 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01550 Arst-Chr4 22168758 22173694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01550 218 668 Miscellaneous Gene Families AT5G53170 50.441 9.99e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01550 K03798 - mnt:21404222 1155.58