LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g01306	ATGGCTTCTTCCCCTTCTTGTTCTAATTATTGTTACAACGGTAACAAGAGTTTGTTAGCATCGGTTATCGTGTCAGTTATCGTGGTAACAATAACGATAAGTAGTGGGGGCGTGGCAATTGCGGAAGGAGGGAGGGTGCCGTTTGCATGTGACCCGAAAAACGGTTTAACGAGGACGTTGAGATTCTGTTGGACGCACGTGCCAATCCACGTGAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGAAGATAAGGCTGGTGGTTAATAACGCCATAGCGGTTCCAAGGCTTGGGATTCAGGGCTATGAGTGGTGGTCGGAGGCCTTGCACGGTGTTTCTAATGTGGGCCCAGGGACTAAGTTCGGTGGGCCCTTCCCTGGTGCCACTAGCTTCCCTCAGGTCATCACAACCGCTGCTTCTTTCAACCAGTCTCTATGGCTTGAAATCGGACGGGTGGTGTCTGATGAAGCAAGGGCAATGTACAATGGTGGAGCTGCAGGGTTGACATTTTGGAGTCCCAATGTGAACATTTTTCGCGATCCTCGTTGGGGTCGTGGCCAGGAGACTCCTGGCGAAGACCCCACCTTGGCCGCGAAATATGCTGCAAGCTATGTGCAAGGACTCCAAGGCAACGGCGCGGGTGACCGGCTCAAGGTGGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAATTGGAACGGCATAGACAGATTTCATTTCAATGCCAAGGTTAGCAAGCAAGACTTGGCGGACACGTATGACGTACCATTCAAAGCTTGTGTGTTGGAAGGGAAGGTGGCTAGTGTCATGTGTTCCTACAATCAGGTCAATGGCAAGCCCACTTGTGCCGACCCCGAACTCCTTCGCAGCACCATCCGCGGCCAATGGGGTCTCAATGGGTACATTGTGTCGGATTGTGACTCGGTCGGAGTATACTATGATAGCCAACACTACACAAGGACGCCGGAAGAGGCGGCGGCGGATGCCATCAAAGCAGGCTTGGACTTGGACTGCGGCCCATTCTTGGCCATCCACACGGATGCGGCCATTAGACAAGGGCTCATTTCGGAGAACGATCTTAATCTTGCTTTGGCTAACCTTATTACGGTCCAAATGAGATTGGGCATGTTTGATGGTGAACCTTCGGCCCAACAGTATGGGAATTTGGGCCCAAGAGATGTGTGTACCCCGGCCCACCAGGAACTGGCCCTTGAGGCAGCTAGACAAGGCATCGTGTTGCTTGAAAACAAAGGGAACGCGTTGCCTTTATCCCCTACGCGGGTTCGCACCGTAGCTGTCATTGGGCCCAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTGTTGCATGTGGCTACACATCACCATTACAAGGGATTTCAAGATATGTTAAGACCGTACATCAAGCAGGGTGCAGGGATGTTGCATGTGGAGGCAACCAACTATTTGGAGCCGCAGAGATCGCATCCAGGCGAACAGATGCAACAATACTTGTCATGGGCCTGGATCAGTCCATAGAGGCTGAGACTAGGGACAGGGTTGGGCTTCTCTTACCAGGCCTCCAACAGGAACTTGTGTCCAGAGTTGCCAGGGCCGCCAGGGGCCCAGTTGTCTTAGTTATCATGTCTGGTGGCCCGGTTGATGTCTCATTCGCCAAAAATGATCCCAAGATCACTGCAATTTTGTGGGCTGGTTATCCTGGCCAAGCTGGAGGAACTGCCATTGCTGATGTCATCTTTGGCAGAACCAATCCAGGTGGAAGGCTTCCAATGACATGGTACCCAGAAAGCTATCTATCGAAAGTGCCAATGACAATAATGGACATGCGTCCAAACCCATCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAGGGCCCAGTTGTGTACCCATTTGGGCATGGACTCAGCTATAGTAGATTCTCCCAAACCCTAGTACTTGCACCCAAACAAGTCTCAGTGTCCTTCTCAACTCCCCTCAAAGCCCAAACAAACTCAACTTGGGCTTCATCTTCAATCAAAGTGAGCCATGCAAATTGTGATGCCCTACATATGGGCTTCCATGTTGATGTGAAGAATGAAGGGTCAATGGATGGGACACATACCCTTTTGATTTTCTCTAAGCCACCAATTAAAGGGAATAATAATTGGTCAGAGGATAAGAAATTGGTGAGTTTTCATAAAGTGCTTGTTCCTGCTGGATCAAAGCAAAGGGTTAGTGTTGGTGTTCATGTTTGCAAGCATTTGTCTGTTGTTGATGAATTTGGGGTCCGAAGGATCCCAATGGGTGACCATGAATTACATATCGGTGATCTCAAGCATTCTATTTCGGTCCAAACTCAAGACTAA	2370	0.4979	MASSPSCSNYCYNGNKSLLASVIVSVIVVTITISSGGVAIAEGGRVPFACDPKNGLTRTLRFCWTHVPIHVRVQDLIGRLTLAEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGPFPGATSFPQVITTAASFNQSLWLEIGRVVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGNGAGDRLKVAACCKHYTAYDLDNWNGIDRFHFNAKVSKQDLADTYDVPFKACVLEGKVASVMCSYNQVNGKPTCADPELLRSTIRGQWGLNGYIVSDCDSVGVYYDSQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTDAAIRQGLISENDLNLALANLITVQMRLGMFDGEPSAQQYGNLGPRDVCTPAHQELALEAARQGIVLLENKGNALPLSPTRVRTVAVIGPNSDVTVTMIGNYAGVACGYTSPLQGISRYVKTVHQAGCRDVACGGNQLFGAAEIASRRTDATILVMGLDQSIEAETRDRVGLLLPGLQQELVSRVARAARGPVVLVIMSGGPVDVSFAKNDPKITAILWAGYPGQAGGTAIADVIFGRTNPGGRLPMTWYPESYLSKVPMTIMDMRPNPSTGYPGRTYRFYKGPVVYPFGHGLSYSRFSQTLVLAPKQVSVSFSTPLKAQTNSTWASSSIKVSHANCDALHMGFHVDVKNEGSMDGTHTLLIFSKPPIKGNNNWSEDKKLVSFHKVLVPAGSKQRVSVGVHVCKHLSVVDEFGVRRIPMGDHELHIGDLKHSISVQTQD	789

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g01306	789	FunFam	probable beta-D-xylosidase 7	72	387	-	-
	Arst4g01306	789	Pfam	Glycosyl hydrolase family 3 C-terminal domain	415	645	IPR002772	GO:0004553\|GO:0005975
	Arst4g01306	789	SMART	Fn3_like_2	708	780	IPR026891	-
	Arst4g01306	789	Gene3D	-	401	646	IPR036881	GO:0004553\|GO:0005975
	Arst4g01306	789	Gene3D	Immunoglobulins	670	789	IPR013783	-
	Arst4g01306	789	PANTHER	SUGAR HYDROLASE-RELATED	32	783	IPR044993	GO:0009044\|GO:0045493
	Arst4g01306	789	PANTHER	SUGAR HYDROLASE-RELATED	32	783	IPR044993	GO:0009044\|GO:0045493
	Arst4g01306	789	PRINTS	Glycosyl hydrolase family 3 signature	295	313	IPR001764	GO:0004553\|GO:0005975
	Arst4g01306	789	PRINTS	Glycosyl hydrolase family 3 signature	133	152	IPR001764	GO:0004553\|GO:0005975
	Arst4g01306	789	PRINTS	Glycosyl hydrolase family 3 signature	221	237	IPR001764	GO:0004553\|GO:0005975
	Arst4g01306	789	FunFam	probable beta-D-xylosidase 2	400	646	-	-
	Arst4g01306	789	SUPERFAMILY	(Trans)glycosidases	61	414	IPR017853	-
	Arst4g01306	789	Pfam	Fibronectin type III-like domain	727	778	IPR026891	-
	Arst4g01306	789	Pfam	Glycosyl hydrolase family 3 N terminal domain	129	344	IPR001764	GO:0004553\|GO:0005975
	Arst4g01306	789	Gene3D	-	72	390	IPR036962	GO:0004553\|GO:0005975
	Arst4g01306	789	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	415	648	IPR036881	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g01306	Arst-Chr4	13912411	13921036	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g01306	11	788	Glycoside Hydrolase	AT5G49360	72.692	0.0	1154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g01306	-		-	aip:107639006	1560.81

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst4g01306	4	13912411	13921036	Arst4g01306	4	13912411	13921036	ECH