Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01145 ATGGGTTTTCGGGCACTATCCTCTAAGTACAAACTCCTACCATCTTTCTTTCGGCCTCTTATTGATCACAAGCCTCGCTGCTATCACGCCCACGCTTCCCCAACCACACAAGTCTCTGGGCCATTATTACCAGACCTTGTTAATGAAATATCTCGTGTACTAAGTGATCACCGAGATCCTCGCCATGATCTAGAAATGTCTCTCAATCCATATTCAGCACAAATATCTACAGATTTGGTTGACCAGGTATTGAAGAGGTGTAAGAATCTTGGCTTCCCATGTCACAGATTCTTTCTTTGGGCTAAATCAATTCCATGTTTCCAACATAGTGTTGAGAGCTTCCACATTTTGGTGGATATCTTAGGAAGCTGTAAACAGTTTGCCATACTCTGGGATTTTCTCATAGAAATGAGAGAGAATTCTCTTTGTGAAATCAGAAGCGAGATGTTCTGGCTCATTTTCCGAGCATATAGCCAGGCAAATTTGCCAGACGGAGCAATACGATCTTTCATGAGAATGGATGAATTTGGAATAAAGCCAACAATTCATGATTTTGATAAGCTGCTGTACTTTTTATGCAAGAGGAAACATGTCAGGCAAGCTCAAAATTTTTTTGATCAAGTTAAGAATGGTTTTGTGTTAACTGCTAAAACTTACAGCATTTTGATAAGTGGATGGGGTGAGATTGGTGATTCAGGAAAGGCTCGTGCGCTGTTTGATGCAATGCTTGAACAAGGATGTCCAGTGGATTTGCTTGCATATAATAATTTGTTAGATGCCCTTTGCAAAGGAGGTAATGTCAATGAAGCTTCAGATATTTTTCATGATATCATGTCAAAAGGAGTTGTGCCGGATGCTTTTACTTACTCAATATTCATTCGTTCATACTGCAACGCAAATGACATGTATTCGGCTTTTAGGGTTCTTGATAGAATGAGAAGGTATGACCTTTTGCCTAATGTGTTTACATACAATTGTGTTATAAAGCAACTTTGTAAGAATGAAAAGGTGCAAGAAGCTTATCAGCTGTTGGATGAAATGATTTCAAGAGGAGTAAAACCGGACACTTGGAGTTACAATGCGATACTCGCTTACCACTGTGACCATTGTGAGGTCAATAGGGCTCTAAAGTTGACGTCTAGAATGGTGAATGATAACTGTCTTCCTGATCGCCATACATATAACATGGTGCTGAAATTGCTGATTAGGATAGGAAGGTTTGACAAGGCAACTGAAGTTTGGGAAAACATGGGGGACAATAAGTTTTATCCTTCTGTGTCTACATATTCTGTCATGATTCATGGTTTATGCAAGAAAAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTCGAGATGATGATTGATGAAGGAATACCGCCTTACGATACTACCATTGAGTTGCTGCGGAATCGTCTCTTAGGGTTGGGATTGTTGGATTACATTGAAATACTAATTGGTAAGATGAGGCAAAGTACTTCCTGTTCAATTCAAGAATCAGCAAAAATTATGAATGGTGATAGGGCATTTCCTAATAATTTGAGGCATGATGAAACAGACATAGAAAGTGACTAA 1572 0.3931 MGFRALSSKYKLLPSFFRPLIDHKPRCYHAHASPTTQVSGPLLPDLVNEISRVLSDHRDPRHDLEMSLNPYSAQISTDLVDQVLKRCKNLGFPCHRFFLWAKSIPCFQHSVESFHILVDILGSCKQFAILWDFLIEMRENSLCEIRSEMFWLIFRAYSQANLPDGAIRSFMRMDEFGIKPTIHDFDKLLYFLCKRKHVRQAQNFFDQVKNGFVLTAKTYSILISGWGEIGDSGKARALFDAMLEQGCPVDLLAYNNLLDALCKGGNVNEASDIFHDIMSKGVVPDAFTYSIFIRSYCNANDMYSAFRVLDRMRRYDLLPNVFTYNCVIKQLCKNEKVQEAYQLLDEMISRGVKPDTWSYNAILAYHCDHCEVNRALKLTSRMVNDNCLPDRHTYNMVLKLLIRIGRFDKATEVWENMGDNKFYPSVSTYSVMIHGLCKKKGKLEEACKYFEMMIDEGIPPYDTTIELLRNRLLGLGLLDYIEILIGKMRQSTSCSIQESAKIMNGDRAFPNNLRHDETDIESD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Arst4g01145 523 Pfam PPR repeat family 251 298 IPR002885 -
Arst4g01145 523 Pfam PPR repeat family 389 438 IPR002885 -
Arst4g01145 523 Pfam PPR repeat family 319 361 IPR002885 -
Arst4g01145 523 Gene3D Tetratricopeptide repeat domain 313 382 IPR011990 GO:0005515
Arst4g01145 523 Gene3D Tetratricopeptide repeat domain 383 453 IPR011990 GO:0005515
Arst4g01145 523 Pfam PPR repeat 218 247 IPR002885 -
Arst4g01145 523 Pfam PPR repeat 154 178 IPR002885 -
Arst4g01145 523 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 111 274 - -
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Arst4g01145 523 Gene3D Tetratricopeptide repeat domain 198 312 IPR011990 GO:0005515
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 460 IPR002885 -
Arst4g01145 523 SUPERFAMILY TPR-like 217 415 IPR011990 GO:0005515
Arst4g01145 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 358 390 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 253 286 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 218 250 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Arst4g01145 523 NCBIfam pentatricopeptide repeat 428 460 IPR002885 -
Arst4g01145 523 Gene3D Tetratricopeptide repeat domain 50 197 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01145 Arst-Chr4 10304707 10308269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01145 166 505 Glycosyltransferase AT1G05670 24.561 4.79e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01145 - - gmx:100810899 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01145 4 10304707 10308269 Arst4g01145 4 10304707 10308269 ECH