Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00976 ATGAGAAGTGGTCTGAGAAGGGCTACAGCTGAGGATTTAAACAGTGGCCCTCAGAGTCTCTCATCACAAGTATTTACCAAGGAGCGTTTCATTACAATCTCCAACTTCAGCTCTAATCCCTGTGCTGTTCTCAGGAAGTTATGGTCTGAGAAGACAGATAATCATACTAGGGTTCAAGAGCTCCACCAAAATGAGAAACCCAGATCAAGGAATTCGTGTAAAAGAGCCAAAGACATGGCTAATCTCATCAATTACAAACCTTGGTCAACTCAGTTGCTGTCTTCATTCACTACCCTTCTTTCCAAAACCAATGTGCTTCAGACTTTACGCCATATCAAGGAACCTTCCAAGGCCTTTCAGTTCTTCAAGTGGGCACATGAAGTGGGTTTCCCGCACAATGCTCAATCCTACTTCATGATGTTGGAAATCCTTGGTCGTCAGAGGAATCTCAATGTTGCTAGGAATTTTCTGTTTTCCATTGAGAAAAAGTCCAATGGAGAAGTCAAGCTTGAGGATAGGTTCTTCAATAGCTTAATTAGAAGTTATGGTGCAGCCGGCCTCTTCAAAGAATCCATTAAGCTTTTTGAGACTATGAAGTCAATTGGTGTATCACCATCTGTGGTCACATTCAACAGTGTTTTGTCTATATTGCTAAGGCGGGGCCGGACCAATATGGCAAGAGCTGTGTACGATGAAATGCTTGGGACATACGGTGTCACTCCAGATGTGTACACATACAATATTTTGATCAGAGGGTTTTGCAAGAATTCCCACATTGAAGAAGGGTTTCGGTTCTTTAAAGAGATGACGAGCTTTGATTGTGATCCGGATGTTGTTACATATAATACACTCGTTGATGGCTTGTGTAAAGCAGGGAAGGTTAGTATAGCGCATAACTTAGTGAATGGTATGAATAAGAAATGCAAAGAATTGAATTCTGATATTGTGACTTACACAACTTTGATTAGAGGGTATTGTATGAAACAAGAAGTAGATAAAGCATTGTTTCTTCTTGAAGAGATGACTAGTAGGGGGCTAAAGCCAAATGTAATTACGTACAATACTCTGATAAAAGGATTATGTGAGGGACAAAAGTTGGACAAGGTAAAGGATATTTTGGGCCAAATGATGGGAGATGGGACTTTCGTACCGGATACATATACCTTCAATATATTAATTCATGCACATTGTTCTGCAGGAAACCTGGATGAAGCATTTAAGGTGTTTGAAAACATGAAAACCCTTCAAGTCCCAGCAGATTCAGCCTCGTACAGTGTTCTGATTCGGAGTTTGTGTCAGAGAGGTGACTATGATGCAGCAGAGAAGCTGTTTGATGAATTATATGAGAATGAAACCTTGTTAAGTAATTATGGTTCCAAGCCGATTGCTGCCTCATATAGTCCTATTTTTCAATATTTGTGTGAACATGGGAAAACTAAGAAGGCTGAGAAGTTACTTAGACAGCTAATGAAAAGGGGAACACAAGATCACCTATCATATAAGACCGTGATTATGGGGCACTGTAAAGAAGGCGGATATGAAAATGGTTATGGGATTTTGGTATGGATGCTAAGAAGAGATTTTGTTCCTGATTTTGAGATATATGATTGTTTGATTGATGGTTTTCTTCGGAAGGATAAGCCTCTTCTTGCAAAGGAGACTCTAGAGAAAATGCTAAAGAGCTCCTATAAACCTAAAACATCTACCTTGCATTCTATATTGTCAAGACTTTTGGAAAAAGGTTGTGTTCATGAGTCTACCTCCCTTATTGTCATGATGCTGGAGAGAAATATTAGACAAAATATAAACCTGTCAACTGAGAATTTACTGCTCCTTTTTGGCTCTGGACTGCGAGATAAAGCATTTCAGATTATTGAGTTGCACTATAAGAATGGATACCGTGTTAAAATAGAAGAAGTGGTTCAATTCCTTTGCCAAAGAGGAAAGCTACCAGAAGCATGCAAGCTGTTGTTGTTTAGTATGGAACATCATAGAAATATTGATATTGACTTGTGTAATTCAGTTATTGAGGGCCTTTGTAAAATTAACAAGGTTTCAGAAGCATTTAATTTATGCTATGAATTAGCGGAGAAAGGTTTACATCAGGAACTGACATGCCTAAATGATCTGATAGCAGCTCTAGAGGCAGGAGGGAGATTAAAGGAAGCTGCATTTATATCGAAGAGAATGCCAAGAGTCCAGACCTAA 2208 0.3918 MRSGLRRATAEDLNSGPQSLSSQVFTKERFITISNFSSNPCAVLRKLWSEKTDNHTRVQELHQNEKPRSRNSCKRAKDMANLINYKPWSTQLLSSFTTLLSKTNVLQTLRHIKEPSKAFQFFKWAHEVGFPHNAQSYFMMLEILGRQRNLNVARNFLFSIEKKSNGEVKLEDRFFNSLIRSYGAAGLFKESIKLFETMKSIGVSPSVVTFNSVLSILLRRGRTNMARAVYDEMLGTYGVTPDVYTYNILIRGFCKNSHIEEGFRFFKEMTSFDCDPDVVTYNTLVDGLCKAGKVSIAHNLVNGMNKKCKELNSDIVTYTTLIRGYCMKQEVDKALFLLEEMTSRGLKPNVITYNTLIKGLCEGQKLDKVKDILGQMMGDGTFVPDTYTFNILIHAHCSAGNLDEAFKVFENMKTLQVPADSASYSVLIRSLCQRGDYDAAEKLFDELYENETLLSNYGSKPIAASYSPIFQYLCEHGKTKKAEKLLRQLMKRGTQDHLSYKTVIMGHCKEGGYENGYGILVWMLRRDFVPDFEIYDCLIDGFLRKDKPLLAKETLEKMLKSSYKPKTSTLHSILSRLLEKGCVHESTSLIVMMLERNIRQNINLSTENLLLLFGSGLRDKAFQIIELHYKNGYRVKIEEVVQFLCQRGKLPEACKLLLFSMEHHRNIDIDLCNSVIEGLCKINKVSEAFNLCYELAEKGLHQELTCLNDLIAALEAGGRLKEAAFISKRMPRVQT 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00976 735 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 463 722 - -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 208 243 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 316 350 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 175 206 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 244 278 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 423 450 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 465 493 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 351 381 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 387 414 IPR002885 -
Arst4g00976 735 NCBIfam pentatricopeptide repeat 279 306 IPR002885 -
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 617 734 IPR011990 GO:0005515
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 453 612 IPR011990 GO:0005515
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Arst4g00976 735 Pfam PPR repeat family 241 290 IPR002885 -
Arst4g00976 735 Pfam PPR repeat family 175 214 IPR002885 -
Arst4g00976 735 Pfam PPR repeat family 314 361 IPR002885 -
Arst4g00976 735 Pfam PPR repeat family 384 433 IPR002885 -
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 236 306 IPR011990 GO:0005515
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 378 452 IPR011990 GO:0005515
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 55 235 IPR011990 GO:0005515
Arst4g00976 735 Gene3D Tetratricopeptide repeat domain 307 377 IPR011990 GO:0005515
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Arst4g00976 735 FunFam Pentatricopeptide repeat-containing protein At1g09900 236 305 - -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Arst4g00976 735 SUPERFAMILY TPR-like 318 492 IPR011990 GO:0005515
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 241 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Arst4g00976 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Arst4g00976 735 Pfam PPR repeat 534 561 IPR002885 -
Arst4g00976 735 Pfam PPR repeat 672 700 IPR002885 -
Arst4g00976 735 Pfam PPR repeat 465 493 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00976 Arst-Chr4 7839193 7845245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00976 424 730 Miscellaneous Gene Families AT4G11690 22.830 1.66e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00976 - - ahf:112754068 1386.32