Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05427 ATGGGAAACTTGGACCCCACGGCCCAGGAGTTCAGGCCCAGAAACTATACCCACGGAGCTCCACCTCCAACTCTTCTGAGGCCACCGGCACCACCTCATCCTCAGCCGTGGTACCCTTACTTAGGTCATCAAGTTGGGGTTCGGTGTCCCACGTCATCTCCTACGAGGTCGCTGATGCTAGGCTTGGTACCCTCCGCGACGGTGGTTTCAGAAGCATGGTTGATGAAGGAGCTTGGAGCGTTCGGGGACGTGAGAGGGGTTCGGATGGAAGGGGTTGGTGAGGGAATGGTGATTGCCATGGTTGACTTCTATGACCTCCGACACGCGGAGGCTGCGTTCACCGCCATTCTGGGCCACCACATGAACATGCATGACTACGCCATGGCGGGTGGTGTGTTGTGGGCACAGTACATGGTGCCCTCATGTGATGATGGGGATAATCAAGGGACGCTGCTGATTTTTAATTTGGATTTACATATGGACGCTATCGCTGTCACTAGTATCTTCCAGCCTTTTGGTGCTGTAAAGGAGGTGAGGCATACCCCACTGAAAAAGAACCAAAGATTCGTAGAGTTCTTTGACATAAGAGACGCAGCAAGGGCTTTGAAGCACATGAATGGCAACCACATTCATGGGAAACCCCTCATTATTGAATTCGGACGGCCAGGAGGAGGACAGTACCGGAAATCAAGTGTTGTTACCAAGGAGGGTTGTTATGATGATAAAGATAATCCTAGTGAAGAATTAGTGGGGAATAGTGGGGGCGAAGAAGAGAGAAACAACCGGTGTAACGATGAGTCCATTGTCGGAGACACGAAGCAGCCAAGTAGGCGTCATAGGAAGGGAAAGCATGCAAAGAAGCAGCATCATCATGATGAAACTCGCCGCTTCTTAATCTCTGCACATGATGGAGACTCTAGAACAACCGTCATGATTAAGAACATACCTAATAAGTACAGCCAGAAGCTACTGTTGAGCATGTTGGATAACCACTGTAATCATTGCAACGAGAAGATTCGGGAAGGCGGCCGTGACCACCAGCCCTTCTCCTCCTATGACTTCCTCTACCTTCCAATTGATTTCAACAGGAACAAGTGCAATGTGGGATACGGGTTTGTAAACATGACGTCTCCAGAGGCAACAATGAGACTCTACAAGGCCTTCCATGGCCAACGTTGGCAAGTTTTCAATTCAAGAAAAATTTGCGAGGTTACCTACGCCAGGGTCCAGGGATTGGAAGCATTGAAGGAGCATTTCAAGAAGTCCAAGTTGGGATACGAGATGGAGAATTGCCTGCCAGTGATGTTTTCACCTCCTCGAGATGGGAGGCAGCTGACAGAGCCACTTGCAATAGTTGCTCATGCTCATCACCAATCACTCATTGTTAGTAGTAGTACCCAAAGTGACGGCGTTGAAGGTCAATCATCATCATAA 1434 0.4944 MGNLDPTAQEFRPRNYTHGAPPPTLLRPPAPPHPQPWYPYLGHQVGVRCPTSSPTRSLMLGLVPSATVVSEAWLMKELGAFGDVRGVRMEGVGEGMVIAMVDFYDLRHAEAAFTAILGHHMNMHDYAMAGGVLWAQYMVPSCDDGDNQGTLLIFNLDLHMDAIAVTSIFQPFGAVKEVRHTPLKKNQRFVEFFDIRDAARALKHMNGNHIHGKPLIIEFGRPGGGQYRKSSVVTKEGCYDDKDNPSEELVGNSGGEEERNNRCNDESIVGDTKQPSRRHRKGKHAKKQHHHDETRRFLISAHDGDSRTTVMIKNIPNKYSQKLLLSMLDNHCNHCNEKIREGGRDHQPFSSYDFLYLPIDFNRNKCNVGYGFVNMTSPEATMRLYKAFHGQRWQVFNSRKICEVTYARVQGLEALKEHFKKSKLGYEMENCLPVMFSPPRDGRQLTEPLAIVAHAHHQSLIVSSSTQSDGVEGQSSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05427 477 MobiDBLite consensus disorder prediction 276 291 - -
Arst3g05427 477 Pfam RNA recognition motif 2 307 420 IPR007201 -
Arst3g05427 477 SMART rrm1_1 150 218 IPR000504 GO:0003723
Arst3g05427 477 CDD RRM3_EAR1_like 307 411 IPR034458 -
Arst3g05427 477 Gene3D - 141 236 IPR012677 -
Arst3g05427 477 FunFam Terminal EAR1-like 1 256 416 - -
Arst3g05427 477 MobiDBLite consensus disorder prediction 235 275 - -
Arst3g05427 477 MobiDBLite consensus disorder prediction 1 31 - -
Arst3g05427 477 Gene3D - 237 421 IPR012677 -
Arst3g05427 477 PANTHER RNA RECOGNITION MOTIF-CONTAINING 305 439 - -
Arst3g05427 477 SUPERFAMILY RNA-binding domain, RBD 149 392 IPR035979 GO:0003676
Arst3g05427 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 222 IPR000504 GO:0003723
Arst3g05427 477 SUPERFAMILY RNA-binding domain, RBD 15 121 IPR035979 GO:0003676
Arst3g05427 477 MobiDBLite consensus disorder prediction 235 300 - -
Arst3g05427 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05427 Arst-Chr3 129009560 129011967 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05427 - - adu:107481599 952.199