Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g03898 | ATGATGGCCGAGGAAGCTCCAAAGAACCAAGAGGCGGTGGTGGTTACACATGTTCCGCCGCCTGAGGCCGAGGAAGAGAAGAAGCAGCCCGTGACTTTGGGCACTCACCTCTCCAAGCTTCCGGAATCCGGAACCTTCAAGGAAGAAAGCACCAAGCTTTCTGATCTCCCTGAGACCCACAACAAGGCGCTACAAGAACTCAAGAGCCTCGTTCAGGAAGCTCTTAATAACCACCAATTCTCTGTCCCTAACCAACCCAAGCAACAACACAAGCCTGAAGAAGCTGTAACTGCTGAGAAAGAAAGTGAAACGAAAGAGGAAGAAAAAGCTTCTGAACCTGCCACGAAAACAGACAACGAGGACGAGGTGGGAGAAGAAGTGAAAGAAACCGCAGTGGTTGAGGTTGAAGAAAAGGTGGTGGCTGCTCCATCCATTGATGATGATGGTGCAAAAACTGTTGAGGCTATTGAAGAGACCGTTGTTGCTGTCTCTGTTTCAACAACAGAAAGTCCACATCCACCGGCACAGAAAGTTTGCCAAGAAGCCAAGGAGGACGTGCCATTGCCACCGGAAGAGGTATCCATTTGGGGGATACCACTTCTTGCAGACGAAAGAAGCGACGTCATCCTCTTGAAGTTCCTGCGCGCCAGAGACTTCAAAGTGAAAGACGCTTTCGCCATGATGAAGAATACAATCCGGTGGAGGAAAGAGTTCGGAATCGATGAGCTAATGGAGGAGAATTTAGATTGTGATGAACTGGAGAAGGTGGTGTTCATGCATGGATTCGACAAAGAAGGACACCCTGTTTGTTACAACATATTCGGCGAGTTCGAGAACAAGGAGCTGTATAAGAAGACATTCTCTGATGAGGAGAAGAGGCAGAGGTTCCTGAGATGGAGGATTCAGTTCTTGGAGAAGAGTATTAGGAAACTGGACTTCAATCCTGGCGCCATTTCCACCATTGTTCAGGTCAATGATCTCAAGAACTCGCCTGGTCTTGCCAAGTGGGAGCTTAGACAAGCTACCAAAGAAGCCCTTCAGCTACTTCAGGACAATTACCCTGAATTTGTGGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTTGCTGTGAATAGAATGATAAGCCCTTTCCTTACCCAGAGAACCAAGAGCAAGTTTGTGTTTGCAGGGCCTTCAAAATCAGCAGACACCCTTTTGAGATACATAAGTGCAGAGCAACTTCCGGTGAAGTATGGTGGACTAAGCAAAGAAGGGGAGTTCGGAAACTCCGATGCTGTTACGGAAATCACAGTGAAGCCAGCAACGAAACATACGGTGGAATTTCCTGTTACTGAGAAATGTTTGCTTTCTTGGGAGCTGAGAGTTATAGGGTGGGAAGTAAGCTATGGTGCTGAATTTGTTCCAAGCTCGGAAGGTAGCTACACAGTGATTATTCAGAAGGCTAGAAAGGTTTCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTCAAGGTTGGTGAGGCTGGAAATGTTGTCCTCACCATTGATAATCCAACCTCTAAGAAGAAGAAGCTCCTCTATCGCTTGAAGACCAAGACTTCCCCTTCTGATTGA | 1599 | 0.4722 | MMAEEAPKNQEAVVVTHVPPPEAEEEKKQPVTLGTHLSKLPESGTFKEESTKLSDLPETHNKALQELKSLVQEALNNHQFSVPNQPKQQHKPEEAVTAEKESETKEEEKASEPATKTDNEDEVGEEVKETAVVEVEEKVVAAPSIDDDGAKTVEAIEETVVAVSVSTTESPHPPAQKVCQEAKEDVPLPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKDAFAMMKNTIRWRKEFGIDELMEENLDCDELEKVVFMHGFDKEGHPVCYNIFGEFENKELYKKTFSDEEKRQRFLRWRIQFLEKSIRKLDFNPGAISTIVQVNDLKNSPGLAKWELRQATKEALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSADTLLRYISAEQLPVKYGGLSKEGEFGNSDAVTEITVKPATKHTVEFPVTEKCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIIQKARKVSSSEEPVLCNSFKVGEAGNVVLTIDNPTSKKKKLLYRLKTKTSPSD | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g03898 | 532 | ProSiteProfiles | GOLD domain profile. | 425 | 526 | IPR009038 | - | |
| Arst3g03898 | 532 | Pfam | CRAL/TRIO domain | 255 | 415 | IPR001251 | - | |
| Arst3g03898 | 532 | SUPERFAMILY | CRAL/TRIO domain | 256 | 418 | IPR036865 | - | |
| Arst3g03898 | 532 | MobiDBLite | consensus disorder prediction | 74 | 91 | - | - | |
| Arst3g03898 | 532 | PRINTS | Cellular retinaldehyde-binding protein signature | 373 | 392 | - | - | |
| Arst3g03898 | 532 | PRINTS | Cellular retinaldehyde-binding protein signature | 209 | 231 | - | - | |
| Arst3g03898 | 532 | MobiDBLite | consensus disorder prediction | 92 | 125 | - | - | |
| Arst3g03898 | 532 | PANTHER | PATELLIN-1 | 22 | 528 | IPR044834 | GO:0008289 | |
| Arst3g03898 | 532 | Pfam | CRAL/TRIO, N-terminal domain | 191 | 230 | IPR011074 | - | |
| Arst3g03898 | 532 | Gene3D | - | 176 | 237 | - | - | |
| Arst3g03898 | 532 | Gene3D | GOLD domain | 431 | 526 | - | - | |
| Arst3g03898 | 532 | MobiDBLite | consensus disorder prediction | 74 | 125 | - | - | |
| Arst3g03898 | 532 | SMART | CRAL_TRIO_N_2 | 206 | 231 | IPR011074 | - | |
| Arst3g03898 | 532 | MobiDBLite | consensus disorder prediction | 42 | 60 | - | - | |
| Arst3g03898 | 532 | SUPERFAMILY | Supernatant protein factor (SPF), C-terminal domain | 426 | 525 | IPR036598 | - | |
| Arst3g03898 | 532 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 52 | 247 | IPR036273 | - | |
| Arst3g03898 | 532 | Gene3D | - | 239 | 430 | IPR036865 | - | |
| Arst3g03898 | 532 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 246 | 421 | IPR001251 | - | |
| Arst3g03898 | 532 | SMART | sec14_4 | 251 | 418 | IPR001251 | - | |
| Arst3g03898 | 532 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Arst3g03898 | 532 | CDD | SEC14 | 252 | 416 | IPR001251 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g03898 | Arst-Chr3 | 110315246 | 110318770 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g03898 | 210 | 410 | Acyl Lipid Metabolism Gene Families | AT5G47730 | 27.962 | 1.80e-11 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g03898 | - | - | gmx:100804544 | 696.427 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Arst3g03898 | 3 | 110315246 | 110318770 | Arst3g03898 | 3 | 110315246 | 110318770 | ECH | |
| Arst3g03898 | 3 | 110315246 | 110318770 | Arst3g03898 | 3 | 110315246 | 110318770 | PCT |