Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01322 ATGATAATAACCGCTACTTTCCGACCACTAAGCTTCCGTCCAAGGTTGTGCATTCTGAGCAAGAAGAAGGAGAAGAGCGACAACAAAAGTAGAACCAGGAAACTGAGCAAGTGGCAAACAGAGACCAACCATAATATCTTTTCCTTCCCAAAATCCAAATCAACCCCACTTCTCATCAATCGCCAACCCAATCCCCAAACAAAATCCCAAGCACTTGAACAAGTCCTCAACGACCTCGAAGCTTCCCTTGAGAAGGGCATCACTATTGAACCCGAAATCTATGCTTCTCTCTTAGAAACATGCTACCGTTTTCAATCCATTCACCACGGCATCCGACTTCACCGCCTTATCCCAACCACCCTTTTGCACAGAAATGTTGGTATATCCTCCAAGCTTCTTAGATTATACGCTTCTTTTGGTTACATGGATGAGGCACACGACCTGTTTGATCAAATGCCTAAGAGAGATGAATATGCATTTCCATGGAATTCACTCATTTCAGGGTATGCTCAAGCTGGCCTCTATCATGATGCCATAGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGAACCGGACTTGTTTACATTTCCTCGGGTTCTCAAGGCGTGCGGAGGAATTCGTTCGGTCGAAGTTGGGGAAGAGGTGCATCGTCACGTGGTTCGTTCTGGTTTTGCCAGTGATAGGTTTGTCCTCAATGCACTCCTTGATATGTATTCTAAGTGTGGTGATATTGTTATGGCTCGCAAGATTTTTGAAAAGATGCCCAATAAAGATTCTATTTCGTGGAATTCAATGCTTGCAGCTTATGTTCATCATGGCCTTGAGGTTGATGCAATCAACACTTTCCACAGAATGCTTTTGAAAGGTTATGAGCCTGATTCTGTTTCCATATCGAAAATTCTTACTGGTGTGTCATCATTGATTCTTGGGGCCCAAATTCATGGATGGGTGATCCGGCGTGGGATTGAGTGGAACTTGTCAGTTGCTAATTCCTTGATCAGAGTGTACTCCAATCATGGCAAGTTAGATAAAGCACGTTGGATATTCAAAGTGATGCCAGAGAAGGATGTTGTGTCATGGAACACTATAATCTCTGCTCATTGCAAACGAAGAGAGGCTCTAGATTATTTTAATCAAATGGAGCATGCTGGAGTAAAACCTGATAAAGTAACATTTGTTTCATTATTATCAGCTTGTGCTTATTTGGGTTTGGTGAAGGATGGAGAGAGGTTGTTTGCTTTGATGTGTGAAAAATATAAAATAGAACCAATTATGGAACATTATGGTTGTATGGTTAATCTTTGTGGAAGAGTAGGAATGATTGAAAAGGCTTATAGCATCATAGTGAATGGAATGGATTCGGAGAATGCTAGTCCAACTCTCTGGGGAGCTTTGTTGTATGCTTGCTTTTTACACGGAGACGTAACAATAGGAGAGATTGCTGCAAACAAGCTTTTTGATTTGGAGCCAGACAATGAACACAATTTTGTACTTCTCATGAAGATCTACGAAAAGGCAGGCAAATCAGAGGACATGGAGAGAGTTAGATTGATGATGGTAGAAAGAGGCCTGGATTATTAA 1584 0.4186 MIITATFRPLSFRPRLCILSKKKEKSDNKSRTRKLSKWQTETNHNIFSFPKSKSTPLLINRQPNPQTKSQALEQVLNDLEASLEKGITIEPEIYASLLETCYRFQSIHHGIRLHRLIPTTLLHRNVGISSKLLRLYASFGYMDEAHDLFDQMPKRDEYAFPWNSLISGYAQAGLYHDAIALYFQMVEEGVEPDLFTFPRVLKACGGIRSVEVGEEVHRHVVRSGFASDRFVLNALLDMYSKCGDIVMARKIFEKMPNKDSISWNSMLAAYVHHGLEVDAINTFHRMLLKGYEPDSVSISKILTGVSSLILGAQIHGWVIRRGIEWNLSVANSLIRVYSNHGKLDKARWIFKVMPEKDVVSWNTIISAHCKRREALDYFNQMEHAGVKPDKVTFVSLLSACAYLGLVKDGERLFALMCEKYKIEPIMEHYGCMVNLCGRVGMIEKAYSIIVNGMDSENASPTLWGALLYACFLHGDVTIGEIAANKLFDLEPDNEHNFVLLMKIYEKAGKSEDMERVRLMMVERGLDY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01322 527 NCBIfam pentatricopeptide repeat 359 389 IPR002885 -
Arst3g01322 527 NCBIfam pentatricopeptide repeat 261 295 IPR002885 -
Arst3g01322 527 NCBIfam pentatricopeptide repeat 231 258 IPR002885 -
Arst3g01322 527 NCBIfam pentatricopeptide repeat 162 193 IPR002885 -
Arst3g01322 527 Gene3D Tetratricopeptide repeat domain 67 211 IPR011990 GO:0005515
Arst3g01322 527 Gene3D Tetratricopeptide repeat domain 373 526 IPR011990 GO:0005515
Arst3g01322 527 Gene3D Tetratricopeptide repeat domain 308 372 IPR011990 GO:0005515
Arst3g01322 527 FunFam Pentatricopeptide repeat-containing protein At4g25270, chloroplastic 67 211 - -
Arst3g01322 527 Pfam PPR repeat 261 290 IPR002885 -
Arst3g01322 527 Pfam PPR repeat 428 448 IPR002885 -
Arst3g01322 527 Pfam PPR repeat 132 155 IPR002885 -
Arst3g01322 527 Pfam PPR repeat 232 258 IPR002885 -
Arst3g01322 527 Pfam PPR repeat family 162 204 IPR002885 -
Arst3g01322 527 Pfam PPR repeat family 356 401 IPR002885 -
Arst3g01322 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Arst3g01322 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Arst3g01322 527 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 212 309 - -
Arst3g01322 527 Gene3D Tetratricopeptide repeat domain 212 307 IPR011990 GO:0005515
Arst3g01322 527 FunFam pentatricopeptide repeat-containing protein At2g33680 330 527 - -
Arst3g01322 527 SUPERFAMILY TPR-like 135 512 IPR011990 GO:0005515
Arst3g01322 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Arst3g01322 527 Pfam E motif 473 524 IPR046848 -
Arst3g01322 527 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 261 525 IPR046960 GO:0003723|GO:0009451
Arst3g01322 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01322 Arst-Chr3 11146920 11148857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01322 95 525 Glycoside Hydrolase AT3G49170 33.710 1.05e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01322 - - gmx:112997711 803.897