Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01186 ATGGATGGTTACGAAGCAACTAGGATAGTGTTCTCAAGGATCCAAAGCATGGACCCTGAAAACGCTTCAAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATTAGGTTAGCATTTGGACCAGAAGCTTTACTTCACTCTGTGATTTCCAAAGCTAGAAAAGACTTAGGTTTACCTTCAAACTCTCCTCCTACACCTTCAACTCCACCATCTCCATCACCTTTTCTTTCAGCTTCTACCAACCCGGTTAACATTTCAAGGCAGAACTCAACTTCTTCTTCTTCAAGGCTTGGTAGTGGGATGAACCTTCCACCTGCTCTAACCATACCAAACCCTTCTTCTTCTTCAGCTTCTTGGGCTGCCATGTCTGACCTTCAAAACCCTGAGGACTTGATGAGTCCTAACAACTTGGTTGTTGGTTCTTCTTCCACAACTTCATCTTCTCTACCCTTTTATGCAAATGGAGGGTCAGATCCAATTGATGAGTACCAGTTACAGGACCAGCTTTCATTCTTGAACGATGGTTCTCCAAATTCTACTCTTGCTGCGGCTGCTTGTGGTGGTTCACACCATAACAAGAGCCATGATTTGTTCTACCCTCACTCAGACATGGCTTCTAGTCCTACTGGTGCTGGTGACCCCTCTTTGTTCCCTTCTTATGGCTGGGGAGGGCCTCTTCATAGGAGAAGTTGTTCAGTGAATGATGCATGTTTGGCTTCAGAGGATCCCAATTCCGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTCCATGGTGGTGGACTTGGAGAAGCTGATGGTGCTGCTGCTGCTGCTGCAATGGTTGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGTCATGAACTTCTCAGATCTAAAACTGCTCAGCAACAAAGATTTGCTGCTGCTTCTCAACTCATGGCATCTTCAAGCTTTCCTTACTCTTCAAAGTGCATGAATTTCCTCTTACAACAACAGCAGCAGCAGCAGCAAAATGATACTCAAAGGGCTGCGGCTGCGGCTTTGATGATGAGCGAGGACTTGCACAAATTCGGAAGATCGAGGCTTGAAAGGAGTGACTTCTCTCTGAACAGCCCTGGCATGGTCAACCCAGCTTCCAGGCAGATCTATTTGACTTTCCCAGCTGACAGCACTTTTAGAGAGGAAGATGTTTCCAACTACTTCAGCATTTATGGGCCAGTTCAAGATGTGAGAATCCCATACCAGCAGAAGCGCATGTTCGGATTTGTTACATTCGTTTATCCGGAGACTGTGAAGCTCATTCTCTCAAAAGGGAACCCTCATTTTGTGTGTGATGCAAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCAGACAAGTACAGGAAGCAACAGCAACAGGTAGATAGGGATTTTTCACCGTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTAGGAGGGAGAATGTTCTACAACACTCAAGACATGCTTTGGAGGAGGAAGATGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAGCTCCTTGACATCAAGAAGCAGCACCATCATCGCGCCCTCTCCGCCGGAAGTCCGATACCATCCCCAACACACTCTCCTAACATGTTCAACCAAACTCTTGTTCATCATTCGTTTCACGGCACCCCGGATTCACCGGAGGAGAATGGATCAGCTTCTGCTCCAAGTAGCACAGCACCGGTTTCGGTTATTGGTCAACAGACAGTCAACATATCTGTTGGCAAGGAAGTTGGAACCAATAATGGAGAGAATGGATATAGTGATGGCAATGGCAATGGCAAGCAAAGTTCAAGTCATGAAGACAGTGATCTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGTTGGGGATTACATGGCTGCCTTCAACAATGGACCTAATGAGGCCATTGATGCAGATCCCTCAGCTTCTTCTGCCAACTCCAAATTTGGAACTAGCTCTCTACTTCCATCAGCATCTGCTCTTGACATGGGTTCATTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATCGGGATGTTAGCCGGGACCGGCGGCGCCATCGGCATTTAG 2226 0.4677 MDGYEATRIVFSRIQSMDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVISKARKDLGLPSNSPPTPSTPPSPSPFLSASTNPVNISRQNSTSSSSRLGSGMNLPPALTIPNPSSSSASWAAMSDLQNPEDLMSPNNLVVGSSSTTSSSLPFYANGGSDPIDEYQLQDQLSFLNDGSPNSTLAAAACGGSHHNKSHDLFYPHSDMASSPTGAGDPSLFPSYGWGGPLHRRSCSVNDACLASEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGEADGAAAAAAMVGSPSKIEMMEQCHELLRSKTAQQQRFAAASQLMASSSFPYSSKCMNFLLQQQQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERSDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDIKKQHHHRALSAGSPIPSPTHSPNMFNQTLVHHSFHGTPDSPEENGSASAPSSTAPVSVIGQQTVNISVGKEVGTNNGENGYSDGNGNGKQSSSHEDSDLQECLEHNLPDSPFASPTKAAVGDYMAAFNNGPNEAIDADPSASSANSKFGTSSLLPSASALDMGSFKSFNCQIPRFSSGHGTIGMLAGTGGAIGI 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01186 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 468 IPR000504 GO:0003723
Arst3g01186 741 MobiDBLite consensus disorder prediction 578 647 - -
Arst3g01186 741 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 399 470 - -
Arst3g01186 741 SUPERFAMILY CCCH zinc finger 254 276 IPR036855 GO:0046872
Arst3g01186 741 MobiDBLite consensus disorder prediction 578 640 - -
Arst3g01186 741 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 665 - -
Arst3g01186 741 MobiDBLite consensus disorder prediction 60 125 - -
Arst3g01186 741 Gene3D - 244 323 - -
Arst3g01186 741 ProSiteProfiles Zinc finger C3H1-type profile. 251 278 IPR000571 GO:0046872
Arst3g01186 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 404 449 IPR000504 GO:0003723
Arst3g01186 741 Gene3D - 332 482 IPR012677 -
Arst3g01186 741 SUPERFAMILY RNA-binding domain, RBD 404 486 IPR035979 GO:0003676
Arst3g01186 741 MobiDBLite consensus disorder prediction 82 125 - -
Arst3g01186 741 MobiDBLite consensus disorder prediction 67 81 - -
Arst3g01186 741 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 276 IPR000571 GO:0046872
Arst3g01186 741 SMART rrm1_1 393 463 IPR000504 GO:0003723
Arst3g01186 741 MobiDBLite consensus disorder prediction 471 493 - -
Arst3g01186 741 CDD RRM_AtC3H46_like 394 463 IPR034365 -
Arst3g01186 741 SMART c3hfinal6 253 277 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01186 Arst-Chr3 9241950 9246427 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01186 - - adu:107477482 1378.62