Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01176 ATGAGTGATTCTAAGGTATTTCTATTTGGGTCTTTTACAGAAGATGAAACCAGATCATTGTTGCAGAAGCAGTCTTCTACTCCAGTTAAAGATGAAAAGCCTGTAGAGAAGAGCCCGCTGCAATTTGGTTCTGTGAATGCTGTTAGTGCCAGATCAAGTAACCTCGGAAATTCATCAAAAGCACCAACCAGTTCTAATGTCTCCCATTCTCATAAGTGCAATGGAGTGAAAATTGTCGGTAATAGTTTACTTGGATCATCAGGTTCTATCAAGGAGAACAATGGAGTGAAAATTGTCGGTATTAGTTTACATGGATCATCAGATTCTTTCAAGGAGAATGGCAGCATTATCAATTGCCCTACTGTCTGTTCGAGTATCGATAGTGCAAACGAAGTTAAGGCGGATAGTGTGTCTTCTGTGCCATTGCTTGATGAGGATGGACCCATGAACAAGATTGCAAATTTGAGCCTGGATGCTTCTGAGGCTGGAAGCCTGAATAATGTATGGAAAAATGATGGTGGCCATAATGATTCTGTATCGAAATTATTTAATCAAGATTCCAAGAAGACACCTAATGGGCATATTGTGTCACAAGTTAAAGATTTACTGCCTCGGGGCCTAATAAATTCTGGAAATCTATGCTTTCTCAATGCAACTGTGCAGGCTCTCTTGTCCTGTTCTCCTTTTGTTCAACTTCTGCAAGACTTAAGAACCCGCAACATTCAGAAGGTTGGCTATCCCACATTGACGGCATTCACTGAATTTCTATCTCAATTTGATGTGCCAAGCTCAACCAAATTAAAGAAGAAAGATACAGATGCTTTGGAGACTGGAAGGCCATTCTGCCCAACTATGTTTGTAGATGTTCTAAAAAAGTTTTCTCCGGATTTGCCAAATGTCATGTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTTTGAGCTTTGTAATGGATCAAATGCATGGTGAATTGTTGAAGCTTGAGGGACAGTCTTCAAGTCTTAATGGTAGCAAATCATCTCTAGTTTCTTCTGCTGAAGATGATGAATGGGAAACCGTTGGGCCGAAGAATAAATCTGCTGTAACAAGAACTCAGAGCTTTGTTCCATCAGAATTGAGTGGAATTTTCGGAGGACAACTCAGAAGTCTGGTGAGAGCTAAAGGGAATAGAGCTTCAGCCACTGTTCAACCATATCTCTTGCTCCAGCTTGACATTTATCCTGATGCTGTCCACACAATTGAGGATGCACTTCACCTGTTTTCTGCTCCAGAAACTGTTGAAGGCTACCGAACTACACTCACTGGAAAGCCTGGCGTTGTGACTGCAAGAAAATCTGTACACATTCAGACACTTCCGAAGATATTGATATTGCACCTGGTACGTTTCGGTTATGGAAGCCAAGGAAGCACTAAGCTACTTAAGCCTGTTCACTTCCCTCTAGAGCTGGTATTGGGTCGAGACTTGCTTGTTTCGCCATCTACTGAGGGTCGAAGATATGAATTAGTTGCCACGATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACTGCCGATGCCCTATATCCTAATGGTCAGTGGCTAAGATTTGATGATGCATCTGTTATTGCCATTGGAGCAAACAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAAGCAGTTGTGA 1677 0.4222 MSDSKVFLFGSFTEDETRSLLQKQSSTPVKDEKPVEKSPLQFGSVNAVSARSSNLGNSSKAPTSSNVSHSHKCNGVKIVGNSLLGSSGSIKENNGVKIVGISLHGSSDSFKENGSIINCPTVCSSIDSANEVKADSVSSVPLLDEDGPMNKIANLSLDASEAGSLNNVWKNDGGHNDSVSKLFNQDSKKTPNGHIVSQVKDLLPRGLINSGNLCFLNATVQALLSCSPFVQLLQDLRTRNIQKVGYPTLTAFTEFLSQFDVPSSTKLKKKDTDALETGRPFCPTMFVDVLKKFSPDLPNVMSGRPRQEDAQEFLSFVMDQMHGELLKLEGQSSSLNGSKSSLVSSAEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLQLDIYPDAVHTIEDALHLFSAPETVEGYRTTLTGKPGVVTARKSVHIQTLPKILILHLVRFGYGSQGSTKLLKPVHFPLELVLGRDLLVSPSTEGRRYELVATITHHGREPSKGHYTADALYPNGQWLRFDDASVIAIGANKVLHDQAYVLFYKQL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01176 558 MobiDBLite consensus disorder prediction 330 357 - -
Arst3g01176 558 Pfam Ubiquitin carboxyl-terminal hydrolase 206 555 IPR001394 GO:0004843|GO:0016579
Arst3g01176 558 Gene3D Cysteine proteinases 194 557 - -
Arst3g01176 558 MobiDBLite consensus disorder prediction 51 70 - -
Arst3g01176 558 FunFam Ubiquitin carboxyl-terminal hydrolase 196 557 - -
Arst3g01176 558 SUPERFAMILY Cysteine proteinases 201 556 IPR038765 -
Arst3g01176 558 MobiDBLite consensus disorder prediction 330 344 - -
Arst3g01176 558 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 206 221 IPR018200 GO:0004843|GO:0006511
Arst3g01176 558 MobiDBLite consensus disorder prediction 18 43 - -
Arst3g01176 558 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 500 518 IPR018200 GO:0004843|GO:0006511
Arst3g01176 558 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 205 558 IPR028889 -
Arst3g01176 558 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01176 Arst-Chr3 9144213 9148321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01176 202 558 Miscellaneous Gene Families AT2G24640 28.610 1.26e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01176 K11841 - gmx:100799656 771.541