Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01157 ATGGCTACTGCAGCAGTTATTGGACTCAGTGGAGGCAAGAGGATTTTGAGTTCATCATACCATTACTCTGATGTCACCGAAAAGCTTTCATTTGGCACTGATTTTGGATCCACACACTATCAGATTGTTCCAACGAAGTCTGTAATAATTGCCAAGAAGCCATCCAATTACACCCCAACCTTTGCAGCATCGAATCGCCAAAACCAGTCCATCAAGGCTCTTCAGGAACATGTTGATGCCGAGGCAGCCGGTACTTCAGATCCATCGTGGTTTCAAGGATTCAGTTCCAGTGACTTAGAGTTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAGTGGAACCTTTCTTTTGAGAGGGATGTGCTAAACGAGCATTCGAGAATGGATAAAAGCCGAAGGAAAGTGGCAGTAACTTGTTCTGGGGTGTCTGCAAGACAGAGAAGAATGAACACCAAGAGGAAGGCCTCGGGTAAAACCAGCGCAATGATCGAACCATGTACTGCTATGCAGCTGAGGTCTGCCATCAGTCCAGAGCTGCTTCAATATCGTTTGAAGGGCTATGTGAAAGGAGTAGTGAGTGAGCAATTGCTCTCTCATGCTGAAGTTGTAAACCTTTCAGAGAAAATAAAAGCTGGACTTTCCTTAGAGGAGCATAAATCCAGAATGAAGGACAAACTAGGATGTGAGCCCTCTGATGATCAAATTGCAGCATCATTGAAGATTTCTCGGGCTGCACTACGAGCAAAAATGATAGAGTGCTCTTTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTTTGTCTATTGCTCAAAGATATGATAACATGGGAGCCGAAATGGATGACCTTGTTCAGGGTGGTTTGATTGGACTTCTTCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCCTTAGTTGAAAATTCAAGAACACTTAGATTGCCCACTCATATACACGAAAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTGGAAGAAAAAGGAGTTACTCCAACTGTGGAAAGGATAGCAAAATGTCTTAATATGTCTCAAAAGAAAGTCAGAAATGCCACTGAGGCAATGAGTAAAATTTTCTCGCTTGATAGGGAGGCGTTTCCATCTTTGAATGGTCTTCCAGGAGAAACTCATCATAGTTATATCGCTGATACTCGCGAAGAGAACATCCCGTGGAATAGAGTAGATGAATGGGCACTAAAGGACGAAGTGAATAAACTCCTTAATGTGACCCTTGTGGAAAGAGAGAGAGAAATCATTCGACTCTATTACGGATTGGATAGAGAATCTCTTACATGGGAGGATATTAGTAAACGGATAGGGTTGTCAAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGGGAGGGATGGAAGCCATGCTTTTGAAACATTAG 1536 0.4245 MATAAVIGLSGGKRILSSSYHYSDVTEKLSFGTDFGSTHYQIVPTKSVIIAKKPSNYTPTFAASNRQNQSIKALQEHVDAEAAGTSDPSWFQGFSSSDLELESSEMGYSVEALLLLQKSMLEKQWNLSFERDVLNEHSRMDKSRRKVAVTCSGVSARQRRMNTKRKASGKTSAMIEPCTAMQLRSAISPELLQYRLKGYVKGVVSEQLLSHAEVVNLSEKIKAGLSLEEHKSRMKDKLGCEPSDDQIAASLKISRAALRAKMIECSLAREKLAMSNVRLVLSIAQRYDNMGAEMDDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHIHERLSLIRNAKFRLEEKGVTPTVERIAKCLNMSQKKVRNATEAMSKIFSLDREAFPSLNGLPGETHHSYIADTREENIPWNRVDEWALKDEVNKLLNVTLVEREREIIRLYYGLDRESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKGGMEAMLLKH 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01157 511 Pfam Sigma-70 region 2 274 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 115 508 - -
Arst3g01157 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 425 501 IPR013324 -
Arst3g01157 511 Pfam Sigma-70 region 3 351 425 IPR007624 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 Gene3D RNA Polymerase Primary Sigma Factor 57 342 - -
Arst3g01157 511 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 196 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 Pfam Sigma-70, region 4 448 497 IPR007630 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 NCBIfam sigma-70 family RNA polymerase sigma factor 268 498 IPR014284 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 CDD Sigma70_r4 438 496 - -
Arst3g01157 511 PRINTS Major sigma-70 factor signature 449 461 IPR000943 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 PRINTS Major sigma-70 factor signature 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 PRINTS Major sigma-70 factor signature 320 328 IPR000943 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 PRINTS Major sigma-70 factor signature 484 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 PRINTS Major sigma-70 factor signature 469 484 IPR000943 GO:0003700|GO:0006352|GO:0006355
Arst3g01157 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 344 400 IPR013324 -
Arst3g01157 511 Gene3D - 343 394 IPR036388 -
Arst3g01157 511 Gene3D - 427 504 IPR036388 -
Arst3g01157 511 ProSitePatterns Sigma-70 factors family signature 1. 296 309 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01157 Arst-Chr3 8930614 8935535 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01157 K03086 - gmx:100801884 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01157 3 8930614 8935535 Arst3g01157 3 8930614 8935535 ECH