Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00941 ATGGTACCGAATCAGAAAACGCGTTTTCTTCTCCCTTATCTCGGATGCACTGTCCCGAATCACAAAATGCACCATTCTGATGAGAGAGAGAGTGAGAGAGAGAGTGAGAGAGAGAAAGTAGCTGTCTTTAAACACCGCAATGAATATCACGCTTCCACGGAGGGTTCTCCTCAACAAAACGACACTCGTTTTGTCTCACTCCTCTCCGACATCGTCCGAGGAAACCAGAGCTGGAAACTTGCCTTCAGCGACCCTTCTATTTCCTCCACATTGAGGCCCCACCATGTTGAACAGCTCTTGATCCGAACCCTCGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTCCTCGGTTTGCACAAGAGCTTCAACCATTCCACAACGTCCTTTGCCATCTTGGTTCATGCTCTTGTTCATCAGAAGCTCTTCTGGCCCGCCAATTCGCTCTTGCATACTCTTCTCTTACGTGGGTCGGAACCAAAATTCGTTTTTTCATGCTTCTTGGATTCTCATCGCAAATGTAAGTTTTTGTCAAATTTGGGTTTTGATTTGTTGGTTCAGAGTTACTTGCAAAATAGAAGGGTTTTAGATGCTGTGGTGGTTGCAAAGCTCATGCTTGAAAACAAGTTGTTGCCTGAAGTTAGAACACTGAGTGCGCTTTTGAATGGTTTATTGAGAATTAGAAGGTTTATAATGGTTTTGGAATTGTTTGATGAGTCGGTGAATGTGGGTGTTCGACCGGATTCTTATACTTGTTCGGCTGTCATTCGGAGCTTGTGTGAATTGAAGGATTTTTCCAAGGCTAAGGAGAAGGTTTGGTGGATGGAAGTGAATAAGTTTGATCTGAGTATCGTAACTTATAATGTCTTAATTCATGGGCTATGCAAGGGTGATCGCGTTTTGGAAGCTGTTGAGGTTAAAAGATCATTGAGTGAAAAGGGTCTGAAAGCAGATTTGGTTACATACTGCACCCTAGTTCTTGGTTTTTGTAGGGTGCAACAATTTGAGGCTGGATTGCATCTTTTTAATGAAATGATTGAATTCGGCTTTGTTCCGAGTGAAGCTGTTGTATCAGGGCTAGTGGATGGGTTAAGAAAGCAAGGAAAAATTGATGATGCTTATAATTTGGTTGTTCAGGTAAGCAGATTTGGTTTTCTGCCAAATTTGTTTGTTTGTAATGCATTAATCAACGCTTTGTGCAAACGAGGAGATTTGGATAAATCAGAGTTGCTTTATAATAATATGTGTTTGGTGAACTTGCATCCCAACGATATTACTTATTCTATTCTGATTGATTCCTTTTGCAGAAGGGGGAGGTTGGATGTCGCGATATCTTATTTTGATAGAATGATAGAGGCTGGCATAGCAGAAACTGTATATGCATACAACTCTATGATAAATGGCCAATGCATGTTTGGACATTTGAGTGCTGCCGAGTCTTTGTTCGCTCGGATGATCAATAATGGTTTGGAGCCTACTGCGACAACCTTTACGCCGTTGATTAGTAGATATTGCAAAGATCTACAACTACGAAAAGCATTCCAACTGTATGATATGATGATTGAAAAAGGAATTGCCCCAAATGTGTATACCTTCACTGCGCTTATTTCTGGGGTTTGCAGTGCAAATAATATGGCTGAAGCATCCAAACTTTTTGTTGAAATGGTGGAAAAGAAAATCACCCCAAATGAGGTAACATATAATGTTATGATTGAAGGGTATTGTAGGAGTGGTAAAATTGACAAGGCCTTTGAATTACTTGATGAGATGCTTCAGAAAGGCCTTGTTCCGGACACATATACCTACAGACCTCTTATCAGTGGCCTTTGTTCTGCTGGCAGGGTTTCAGATGCTAAAAATTTTGTTGATGTTCTACACAAACAGGACCGTAAATTAAACGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCCAAGAAGGAAGATTGGTGGAGGCATTGAGCACTGCTTCTGATATGATTCAAAGAGGAATCAATGTAGATTTGGTTTGCCATGCTGTTCTCATCGACGGTTCACTGAAGCAACTAGATAGGAAAACACTATTTGGTCTCTTAAAACAGATGCAGGATCATGGATTGAAACCTGATAATGTAATATATACAAGTATGATCGATGCATTCAGCAAAGAAGGATCTTTTGAGAAGGCTTTCCAGTGTTGGGATTTGATGCTTACGGAGGAATGCTTTCCCAATGTTGTAACATATACTGCTTTGATGAATGGTCTATGCAAGGCGGGTGAAATGGACAGAGCAGGTCTTCTCTTTAAAAAAATGATGGCTGCAAATGTCCCTCCAAATTCAATCACATATGGCTGTTTTCTTGATCGTCTTACCAGCGAAGGGCATATGGAGGAAGCTATGGGTCTCCACCATGCAATGCTTAAAGGGCTTTTGGCGAACACTGTAACATACAACATCCTTATTCGTGGCTTCTGCAAGTTAGGTAGATTTAACGAAGCCAGCAAGGTGCTTTCTGAAATGACCGAAAATGGCATTTTCCCCGACTGTATTACCTATTCAACTTTAATTTATGAGTACTGCAGAAGTGGCAACGTAGGAGAAGCAGTTACATTGTGGGATACCATGCTAAACAAAGGTCTTGAGCCGGACTTGGTTGCATATAACTTGTTACTATATGGTTGTTGTGTTAATGGAGAGCTCAACAAAGCATTTGAGTTGCGCGATGACTTGCTGAGGAGAGGGGTGAAGCCAAGGCAAAATTTTCGAGTACTGCACAGGGGGCAATGTAGCAGCAGGAGCAGCGGTTAA 2790 0.4143 MVPNQKTRFLLPYLGCTVPNHKMHHSDERESERESEREKVAVFKHRNEYHASTEGSPQQNDTRFVSLLSDIVRGNQSWKLAFSDPSISSTLRPHHVEQLLIRTLDDSKLALRFFNFLGLHKSFNHSTTSFAILVHALVHQKLFWPANSLLHTLLLRGSEPKFVFSCFLDSHRKCKFLSNLGFDLLVQSYLQNRRVLDAVVVAKLMLENKLLPEVRTLSALLNGLLRIRRFIMVLELFDESVNVGVRPDSYTCSAVIRSLCELKDFSKAKEKVWWMEVNKFDLSIVTYNVLIHGLCKGDRVLEAVEVKRSLSEKGLKADLVTYCTLVLGFCRVQQFEAGLHLFNEMIEFGFVPSEAVVSGLVDGLRKQGKIDDAYNLVVQVSRFGFLPNLFVCNALINALCKRGDLDKSELLYNNMCLVNLHPNDITYSILIDSFCRRGRLDVAISYFDRMIEAGIAETVYAYNSMINGQCMFGHLSAAESLFARMINNGLEPTATTFTPLISRYCKDLQLRKAFQLYDMMIEKGIAPNVYTFTALISGVCSANNMAEASKLFVEMVEKKITPNEVTYNVMIEGYCRSGKIDKAFELLDEMLQKGLVPDTYTYRPLISGLCSAGRVSDAKNFVDVLHKQDRKLNEMCYSALLHGYCQEGRLVEALSTASDMIQRGINVDLVCHAVLIDGSLKQLDRKTLFGLLKQMQDHGLKPDNVIYTSMIDAFSKEGSFEKAFQCWDLMLTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKKMMAANVPPNSITYGCFLDRLTSEGHMEEAMGLHHAMLKGLLANTVTYNILIRGFCKLGRFNEASKVLSEMTENGIFPDCITYSTLIYEYCRSGNVGEAVTLWDTMLNKGLEPDLVAYNLLLYGCCVNGELNKAFELRDDLLRRGVKPRQNFRVLHRGQCSSRSSG 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Arst3g00941 929 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 504 649 - -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 842 876 IPR002885 -
Arst3g00941 929 Pfam PPR repeat 775 802 IPR002885 -
Arst3g00941 929 Pfam PPR repeat 461 490 IPR002885 -
Arst3g00941 929 Pfam PPR repeat 636 665 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 879 911 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 391 423 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 530 564 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 809 843 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 844 877 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 460 493 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 636 668 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 425 455 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 740 773 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 496 529 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 320 354 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 705 739 IPR002885 -
Arst3g00941 929 NCBIfam pentatricopeptide repeat 565 599 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 562 611 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 283 331 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 496 541 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 387 436 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 702 751 IPR002885 -
Arst3g00941 929 Pfam PPR repeat family 807 855 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 772 IPR002885 -
Arst3g00941 929 Pfam PPR repeat 872 902 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 234 380 IPR011990 GO:0005515
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 807 841 IPR002885 -
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 454 543 IPR011990 GO:0005515
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 684 787 IPR011990 GO:0005515
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 381 453 IPR011990 GO:0005515
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 788 927 IPR011990 GO:0005515
Arst3g00941 929 Gene3D Tetratricopeptide repeat domain 544 683 IPR011990 GO:0005515
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 877 911 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Arst3g00941 929 SUPERFAMILY HCP-like 397 597 - -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Arst3g00941 929 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Arst3g00941 929 SUPERFAMILY TPR-like 323 830 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00941 430 927 Glycosyltransferase AT1G05670 30.237 1.26e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00941 - - aip:107632504 1709.89