Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g00877 | ATGCGCACAGCAACATTACTACTCCACTTGTGGTTTGAAAATACACATCACTTCCTCATATTTGTGGTACTTGTTGTAGATGACAAGAAATCAAATGTGACTCAGAATGTTGATGCTGCTAACGAGAAATTGGATGCCTGGACATCCCATAAGACTGAAATAGGAGTTGTATACTATTATAATGCCTTGACAGGAGAATCAACATATGATAAACCTGCTGGCTTTAAAGGCGAGCCTCACCAAATTGCTGTGCAGCCAACTCCAGTTTCAATGGTGGATATACCGGGTACAGATTGGATGTTGGTCTCCACTAGTGATGGGAAGAAAAATTACTACAACAAACAAACCAAGACAAGCTGCTGGGAAGTTCCAAATGAGGTAGCTGAATTGAAAAAGCAGGATGGTGATGTCACAAAAGATCATTCAATGTCAGTTCCAAATACTAATGTATTGTCTGGTAGAGGGTCTGGAATGGTTACTCTGAATACTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTGTTCAGAGCTCACCATCGGCACTGGATTTGATCAAGAAGAAGCTGCAGGAGTCTGGAATGCCTGTTGCTTCCTCTGCTGTTCCTGTCTCACCAGTACAAACAGGATCTGAAACAAATGGTTCCAAAGCAGCTGAATCTGCAGCAAAGGGCCAGGATAAGTTGAGGGATAGAGAACGGGAGCTTTGGAAAAGGAAGCAAACTAAGGAGCAGGAAATGGAAAGGGTGCGGGTGAAAATCCAAAGAAAGGAGGCAATCACTTCTTTTCAACCTTTACTTGTGGAGACAATCAAAGACTCTTTGCACATGCAGTACTTTATATTGCACACTAATGTCAGGGATCTCGTGAAGCGTCTTTTGAAATCTGATCCAAGATATAACAAAGTTCCAAGGAAAGACAGGGAACCCTTGTGGCGCCGAGATGTGCAGCGGCGGCAAAAGTCATCCCAGGAAGAGAAAAACACAGATACTAAGGGTAGAAACACATTAGAATCTATTAAACTTGCGTTGGAAGCTGGGAGATCCCACGAGAGAAGATGA | 1077 | 0.4318 | MRTATLLLHLWFENTHHFLIFVVLVVDDKKSNVTQNVDAANEKLDAWTSHKTEIGVVYYYNALTGESTYDKPAGFKGEPHQIAVQPTPVSMVDIPGTDWMLVSTSDGKKNYYNKQTKTSCWEVPNEVAELKKQDGDVTKDHSMSVPNTNVLSGRGSGMVTLNTPAINTGGRDAAALKPSSVQSSPSALDLIKKKLQESGMPVASSAVPVSPVQTGSETNGSKAAESAAKGQDKLRDRERELWKRKQTKEQEMERVRVKIQRKEAITSFQPLLVETIKDSLHMQYFILHTNVRDLVKRLLKSDPRYNKVPRKDREPLWRRDVQRRQKSSQEEKNTDTKGRNTLESIKLALEAGRSHERR | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g00877 | 358 | Gene3D | FF domain | 245 | 335 | IPR036517 | - | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 133 | 156 | - | - | |
| Arst3g00877 | 358 | CDD | WW | 104 | 126 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | CDD | WW | 47 | 72 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | ProSitePatterns | WW/rsp5/WWP domain signature. | 47 | 72 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | SUPERFAMILY | WW domain | 98 | 130 | IPR036020 | GO:0005515 | |
| Arst3g00877 | 358 | SMART | ww_5 | 42 | 74 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | SMART | ww_5 | 94 | 126 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 305 | 339 | - | - | |
| Arst3g00877 | 358 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 217 | 279 | IPR045148 | GO:0003712|GO:0070063 | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 202 | 236 | - | - | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 207 | 225 | - | - | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 140 | 156 | - | - | |
| Arst3g00877 | 358 | MobiDBLite | consensus disorder prediction | 305 | 358 | - | - | |
| Arst3g00877 | 358 | Pfam | WW domain | 46 | 72 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | Gene3D | - | 85 | 143 | - | - | |
| Arst3g00877 | 358 | Gene3D | - | 27 | 84 | - | - | |
| Arst3g00877 | 358 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 99 | 126 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | ProSitePatterns | WW/rsp5/WWP domain signature. | 99 | 124 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | Coils | Coil | 245 | 265 | - | - | |
| Arst3g00877 | 358 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 47 | 74 | IPR001202 | GO:0005515 | |
| Arst3g00877 | 358 | SUPERFAMILY | WW domain | 46 | 76 | IPR036020 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g00877 | Arst-Chr3 | 6422402 | 6425240 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g00877 | K12824 | - | adu:127745424 | 702.59 |