Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00868 ATGGCAAGCCATCAAGGGAAAGTTCCTCCTTCGAATGGGTCTGTGTATGTATGCAACTTGCCTTTTGGCACTGACGAAACCATGTTGGCCGAGTATTTTGGCACCATTGGTTTGATCAAGAAAGATAAACGGACCGGGAGGCCTAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCGACTGTAACATATGAAGATCCGCATGCCGCTGTAGCTGCTGTTGAATGGTTTAACAACAAGGATTTTCATGGTAGTACAATTGGAGTTTTTATAGCTGAGTCAAAAAACAAAGACGAGCAAGCCTATAATTCAGTGGCAGAACCGGCTGTTGCTGGTAATGTTGGTGGGCTAGAGGAAACTACTAGAGATGTTAATGGGGGTAGTGGAAGAGGTAGAGGTCAAATTGATTCTTCAGGCAAGGCTTGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACTTCTTGCTCTTTTAATCGCTGTGGAAGTGCTCGTCCAGTTGGTGCTGCTGGTGTTGCTGGGGGTGGTGGTCGTGGCAAGGGACGTGCCAGTCAAGGTCAAGAGTCAGGGGGTGTTGGCCGTCCAGTTACCGGGGGACTCTTTGGGCCGAATGACTGGCCTTGTCCAATGTGTGGTAACATCAATTGGGCGAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGCCACAATGAGGGTGGTGTAAGAGGAGGGCGAGGTGGAGGTTACAAAGAGCTGGATGAAGAAGAAATTGAGGAAACTAGACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTAAAACACAGCAGGCTGAAGCTGCAAGAGTGCTTCCTGGTTCAGGGCGTGCTGGGTGGGAGGTTGAGGACCTAGGGATTGACAGGGATTCCAGAGAAAGAAGTAGAGACAGGGTGAGAGATCGTAATGATGGGGAGAGCAGGAACAGAGATCGAAATGAAAAAGAGAGGCCAAGCAGTCGGATCAGAGAGAGGGACAGGGGAAGGGATCGTGACTGGGATTACGATGATCGAGATAGAGATTATGGCCGCGATCGAGACCGGGACCGGGGTAGGCATCGTCACTAA 1143 0.4873 MASHQGKVPPSNGSVYVCNLPFGTDETMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGSTIGVFIAESKNKDEQAYNSVAEPAVAGNVGGLEETTRDVNGGSGRGRGQIDSSGKAWQQEGDWLCPNTSCSFNRCGSARPVGAAGVAGGGGRGKGRASQGQESGGVGRPVTGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEDLGIDRDSRERSRDRVRDRNDGESRNRDRNEKERPSSRIRERDRGRDRDWDYDDRDRDYGRDRDRDRGRHRH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00868 380 Coils Coil 250 270 - -
Arst3g00868 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Arst3g00868 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Arst3g00868 380 SMART rrm1_1 14 95 IPR000504 GO:0003723
Arst3g00868 380 CDD RRM_SARFH 15 97 - -
Arst3g00868 380 SUPERFAMILY Ran binding protein zinc finger-like 202 236 IPR036443 -
Arst3g00868 380 ProSitePatterns Zinc finger RanBP2-type signature. 210 229 IPR001876 -
Arst3g00868 380 ProSiteProfiles Zinc finger RanBP2 type profile. 206 235 IPR001876 -
Arst3g00868 380 MobiDBLite consensus disorder prediction 235 270 - -
Arst3g00868 380 MobiDBLite consensus disorder prediction 306 380 - -
Arst3g00868 380 FunFam HIV Tat-specific factor 1 12 96 - -
Arst3g00868 380 SMART zf_4 208 232 IPR001876 -
Arst3g00868 380 MobiDBLite consensus disorder prediction 247 270 - -
Arst3g00868 380 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Arst3g00868 380 Gene3D - 12 95 IPR012677 -
Arst3g00868 380 Gene3D - 205 236 - -
Arst3g00868 380 MobiDBLite consensus disorder prediction 174 202 - -
Arst3g00868 380 MobiDBLite consensus disorder prediction 122 145 - -
Arst3g00868 380 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 29 128 - -
Arst3g00868 380 MobiDBLite consensus disorder prediction 307 373 - -
Arst3g00868 380 FunFam Zinc finger Ran-binding domain-containing protein 2 201 235 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00868 - - aip:107628735 634.409