Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00778 ATGGAACTCAACCTCTGCGTGAACTACCATAACCGTCACGCTTTCAGATTCACCTCTCCTTCCGCTTTCTCTCTCTCCACTCTCCGTTCCGTCCGCACTCACTTCCTCGGTTCCGCCCACACTCTCCGTCCTCCACTACCACCTCTTCAATCTCGCAAGAAATGCAACAGGTTAGGGCTTCTCCGCCTCCACTCACCGCGCTTCGTCTTCAAGGCTTCTTTGCAATCTCACTCTCTCATCGTCGTTGTCGTCCTCGTCACCTTATCCGCCGTTTCTATCCTCCGATTCACTCTCAATAACCGAAAGAAGTCTCGCAATCAGACACGTGGACATGCAAAATTTGCATTATCGCGACAAGGAAGCAATGTGGGGAACCAGGTCATTGAAAGCCAGATTCTCGGTTTTCCAGAATTTCAAAGGGATAACCCGTTGAGTGAAATTGGAAATCTAACAGATCACAATGCAGAAGATAACCATATTCTCGAGGACAAAGAGTCTCAGCTTCCGTTATTGAAATCTTCATTGGTTCACGAAGCATCCTTCATGACCAACATATCAGATTCATCTACTCCTGTTCTTGACTCCAGTTTCAATAATAGTAGTTCGAGAGTTTTAGAAGAGTCTATTTTGCCAGATGCTTTCCAATCAACTGTGTTGCAACCTCTAGCTTTTGCTGAAGAAATGGCTTTACAAGTAGAAGAAAATCAAGATCAAGCTGACTCTGATCCTGAGTCACCTTTGACTATAGTTAAATCTGAGCATGCCACTTCTTCTGTTGGTGTAAACAATGAACTCACAACAATCGATGAACAAACTAAAGAAAACATTGATGCCATCAGCTTTGATGTCCTTTTCGGTGAATCAGCGAGGCAAGAGCTGTACATGTTTTATGAGGATAACAAGTCTACAGTTGGGTCCATGACACCACTTAGTAGTCTAAAGTCGTTATCTCTTCATGCTTCAACTAATAATGTTAAAGGATTGCCCTCAACAATGAGAAATACCACACTAAAAGGATCTGATATCTCAACAGAATTTTCTCCACAAGAATATATTGAAGGAGTGGTACCAATTTCCAGTCACACAGAAGGCTACACTCCACAAAATGGAAGTAAACACTCGAGGAAAGGTGGCAGAGCTCTGCCTGCCAAAGTTTTTCCCAACAATGGCCACTCAATCAACATGCAATTTGATCAGAAAAGTGATCAAACAAGGGTGGAGGATGATCAGAAGAATGACCATTCAGATTATCTGAGCAGATATAATAAGCTGTTAAAAGCTGCGAGGTTACATGAAAGTTTAGAATTGCTTAAAGATATGGAAACAAAGGGTTTATTAGATATGACCAAGATTTATCATGCAAAGTTTTTTAACGTCTGCAAGAGGAAAAGGGCAGTTAAAGAAGCTTTTGATTACATTAGGCTAATTCCAAATCCAACTTTGAGTACATTTAACATGCTTATGTCAGTGTGTACAAGCTCCCAAGATTCAGAAAGGGCTTTCGAAGTGTTGAAGCTACTGAAAGAGGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATTTCCACTTGTGCTAAGAGTGGAAAAGTTGATACAATGTTTGAAATGTTTCACAAGATGGTTAATTCTGGAGTGGAACCCAATGTTCATACCTATGGGGCACTCATTGATGGTTGTGCTAGAGCTGGGCAAATAGCAAAAGCATTTGGTGCTTATGGAATATTGAGGTCCAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTCAGTCAGGAGCGGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAATACAACCCATTGACCCAGATCACATAACTATTGGTGCATTGATGAAGGCTTGTGCAAATGCTGGTCAGGTTGAACGGGCACTAGAAGTGTATAAGATGTTACAAAAATATAATTTAAAGGGAACTCCAGAAGTTTACACGATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTAGTGTTTACAATGACATGACCCAGAAAGGGGTTCTCCCTGATGAGATGTTTCTGAGTGCACTGATAGATGTTGCTGGACATGCGAAAAAGCTGGATGCTGCCTTTGATGTCCTCAAAGAAGCTCGTAAAGGAGGAATACATATTGGAATGATGTCATATAGCTCGCTAATGGGTGCCTGTAGCAATGCAAGAAATTGGGAAAAGGCATTGGAGCTATATGAATATCTCAAGGCACATAAATTGGTGCGAACAGTTTCAACAGTTAATGCTTTGCTCACTGCGCTTTGTGATGGAAATCAATTTCAGAGGGCTTTGGAAGTTTTATCTGAAATGAAAGGATTGGGATTGTGCCCAAACAGTATCACATTCTCAGTACTGTTAACAGCAAGCGAGAAAAACGATGATATGGAAGCAGCTCAAATGCTTCTTTCTCAAGCCAAAATGGAGGGTGTTGCCCTTAATGTCAACATGTGTCGATGCATAATTGGAATGTGCCTGCAAAGATATGAGAGGGATTGCTTTGTTGGTGAACCTGTTTTATCTTTCAACTCAGGACGGGCCCAAGTCAATAATAAATGGACATCACTGGCTTTAGCAGTGTATCGTGAAACACTTGGAGCTGGTGAAAAACCTACAAGTGAAATACTGTCGCGACTTCTGGGATGCTTACAACTCCCTTATGATGCATCTGTCAAGAATAGACTAGTTGACAACCTGGGAGTAAGCACTGAATCTTCAAGAAACTCAAACCTTCGCGCATTAGTAGATGGTTTTGGGGAATATGATGTTCGTGCTTTTTCAATACTAGAGGAAGCTGCTTCATATGGAGTTGTTTCATCAGTATCATTCAAAGTGAGTCCTATTGTTGTTGATGCTAAGGACATGCATACGTCTACTGCTGAGGTTTATCTCTTAACTGTTTTGAAAGGTCTCAAGCATCGACTGGCAGCAGGTGCAAGATTATCCAATATAATAATTTTACTGCCGGTAGAGAAAACAAAAGTTTCAACTCAAAAGGGGGAAAAGATGATCAACTTGGCTAACAGAGTTGGCCAGGCAGTTGCAGCTTTATTCAGGAGACTTAAAATTCCTTACCAGGGTCACGAATCGAGTGGGAAGCTTAGAATTAATGGTCTAGCTCTGAAGAAATGGTTTCAGCCGAAACTTGCATCATTCAGTGGGAAACCAGGTGACTGGAGCTCATCCCCATCAAGACTGGGCAAACGCATTAGCCATCAGCAGCGAAGGATTCGAACCGGCAATTTATCTTTGGACTAA 3312 0.4179 MELNLCVNYHNRHAFRFTSPSAFSLSTLRSVRTHFLGSAHTLRPPLPPLQSRKKCNRLGLLRLHSPRFVFKASLQSHSLIVVVVLVTLSAVSILRFTLNNRKKSRNQTRGHAKFALSRQGSNVGNQVIESQILGFPEFQRDNPLSEIGNLTDHNAEDNHILEDKESQLPLLKSSLVHEASFMTNISDSSTPVLDSSFNNSSSRVLEESILPDAFQSTVLQPLAFAEEMALQVEENQDQADSDPESPLTIVKSEHATSSVGVNNELTTIDEQTKENIDAISFDVLFGESARQELYMFYEDNKSTVGSMTPLSSLKSLSLHASTNNVKGLPSTMRNTTLKGSDISTEFSPQEYIEGVVPISSHTEGYTPQNGSKHSRKGGRALPAKVFPNNGHSINMQFDQKSDQTRVEDDQKNDHSDYLSRYNKLLKAARLHESLELLKDMETKGLLDMTKIYHAKFFNVCKRKRAVKEAFDYIRLIPNPTLSTFNMLMSVCTSSQDSERAFEVLKLLKEARLEPDCKLYTTLISTCAKSGKVDTMFEMFHKMVNSGVEPNVHTYGALIDGCARAGQIAKAFGAYGILRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEIQPIDPDHITIGALMKACANAGQVERALEVYKMLQKYNLKGTPEVYTIAINSCSQTGDWEFACSVYNDMTQKGVLPDEMFLSALIDVAGHAKKLDAAFDVLKEARKGGIHIGMMSYSSLMGACSNARNWEKALELYEYLKAHKLVRTVSTVNALLTALCDGNQFQRALEVLSEMKGLGLCPNSITFSVLLTASEKNDDMEAAQMLLSQAKMEGVALNVNMCRCIIGMCLQRYERDCFVGEPVLSFNSGRAQVNNKWTSLALAVYRETLGAGEKPTSEILSRLLGCLQLPYDASVKNRLVDNLGVSTESSRNSNLRALVDGFGEYDVRAFSILEEAASYGVVSSVSFKVSPIVVDAKDMHTSTAEVYLLTVLKGLKHRLAAGARLSNIIILLPVEKTKVSTQKGEKMINLANRVGQAVAALFRRLKIPYQGHESSGKLRINGLALKKWFQPKLASFSGKPGDWSSSPSRLGKRISHQQRRIRTGNLSLD 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00778 1103 Gene3D Tetratricopeptide repeat domain 706 932 IPR011990 GO:0005515
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Arst3g00778 1103 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 707 854 - -
Arst3g00778 1103 Gene3D Tetratricopeptide repeat domain 618 689 IPR011990 GO:0005515
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Arst3g00778 1103 Coils Coil 807 827 - -
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 765 797 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 730 761 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 660 693 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 552 585 IPR002885 -
Arst3g00778 1103 NCBIfam pentatricopeptide repeat 625 655 IPR002885 -
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 615 IPR002885 -
Arst3g00778 1103 MobiDBLite consensus disorder prediction 358 385 - -
Arst3g00778 1103 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 429 560 - -
Arst3g00778 1103 Gene3D Tetratricopeptide repeat domain 454 617 IPR011990 GO:0005515
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Arst3g00778 1103 Pfam Pentacotripeptide-repeat region of PRORP 630 803 IPR033443 -
Arst3g00778 1103 Pfam Pentacotripeptide-repeat region of PRORP 483 621 IPR033443 -
Arst3g00778 1103 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 615 706 - -
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Arst3g00778 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Arst3g00778 1103 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 24 1102 - -
Arst3g00778 1103 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 24 1102 - -
Arst3g00778 1103 MobiDBLite consensus disorder prediction 1070 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00778 Arst-Chr3 5552550 5560759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00778 428 846 Glycosyltransferase AT1G05670 24.766 3.98e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00778 - - gmx:100814164 1524.61