Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g00556 | ATGAAAAATACAAAAGGTGGTGGAGGCGGCGGCGATAGTGGTGGCACAATGTTAATAGAACAACGAAACGGCGTCGTTCGCCGACCTAAGCTAGGAGCTATATTTCGTAGCTCCGATCCAACCTCGCTCTACACACCCAACCACTTCGACGAAGATCACAACCGCCGCGTGACCAGCGGCTCCGCCCAAGCGGACAGCAGCAGCAGCAGCAGCAATAACGCCTCTCCTTACAACATGTCTCCATACAACAACACCACCAGCAGCGTCTCTTCCTCTCCATACAACAAATCGCCATGGCTCTTACCTTCGATAAACTTCTTCCACCAAAACGAAATCGAAAACGACGCGTTTTACTCCCAAAACGGCCTCATCGGATCCATCGTTCGCGAAGAAGGACACATCTACTCCCTCGCCGTCAACGGAAGCTTGTTGTACACAGGCTCCGAGAGCAAGAACATTAGGGTTTGGAAAGATCTCAAGGACTTCGCCGGATTCAAATCCAACAGCGGATTCGTCAAAACGATCGTAATCTCCGACGAGAAAATCTACACCGGTCACCAAGACGGAAAGATCAGAGTCTGGAAGGTTTCTAAGAAGAATCCAAGCTCATACAAGCGCGTTGGAAGCTTGCCAACGTTTAAGGAATACTTTAAGAGTTCAATGAACCCTAAGAATTACGTAGAAGTTCGGAGGAATCGAAGCGCCGTTAAGGTGAAGCATTTCGACGCCGTTTCGACCTTGAGCTTGGACGAAGAAGCAGGATTGTTATATTCTGGATCTTGGGATAAGACGGTTAAGGTTTGGAGAATCTCCGATTCCAAGTGCTTAGAATCCATTGACGCCCACGAGGACGCCGTGAATTCGGTGGTTGCGGCGTTTGGGGCGTTTGTGCTCACCGGCGCCGCCGATGGAACCGTCAAGATGTGGCGGAGGAAGCAAGTGAATGAGAAGAAGACGAGGCACGTGATCGATGGAATTTTGCTGAGGCAGGAGAACGCCGTGACGGCGCTGGCGGTGAACCGGTTGGCGGCGGTGGTTTACGCCGCGTCGTCCGACGGATTGGTGAATTTCTGGGAGCGGGATCTCAAGGGCGGCGGGCTGTGTCACGGCGGAGTTTTGAGAGGACATAAACTCGCCGTGCTTTGCCTTGCCGTGGCCGGAAACTTGGTGTTCAGCGGCTCTGCCGATAAGAATATATGCGTGTGGAAGCGCGACGAGAGCGGCATCCACACGTGTCTTTCGGTGCTCTCCGGCCACACTGGGCCGGTGAAGTGTCTCACCGTCAAAGAAGAAGAAGACCGCCGGCAAGGTCAACGCCGAAAAGGTGACCAGCGATGGATTATTTACACTGGGAGCTTGGATAACTCTGTGAAGGTGTGGCGCGTGGCTGAAAACGCGCCGGAGTTGAAGATGATACAAGGGTGGCCATTGCCGAGTCATGGCGGCACACCAGGCCGTGATAATTCTTCCACAGCAGGATCGAGTCCGTCGTCTTTGCCGGTGACAAGTGCAATTAGCGGCAATTTCAACAATAATTTACAAATAAATATCAATAATATCAATGATGTCTACCCAAAAAGGTTACAGTCTCAAAGTTAG | 1599 | 0.5178 | MKNTKGGGGGGDSGGTMLIEQRNGVVRRPKLGAIFRSSDPTSLYTPNHFDEDHNRRVTSGSAQADSSSSSSNNASPYNMSPYNNTTSSVSSSPYNKSPWLLPSINFFHQNEIENDAFYSQNGLIGSIVREEGHIYSLAVNGSLLYTGSESKNIRVWKDLKDFAGFKSNSGFVKTIVISDEKIYTGHQDGKIRVWKVSKKNPSSYKRVGSLPTFKEYFKSSMNPKNYVEVRRNRSAVKVKHFDAVSTLSLDEEAGLLYSGSWDKTVKVWRISDSKCLESIDAHEDAVNSVVAAFGAFVLTGAADGTVKMWRRKQVNEKKTRHVIDGILLRQENAVTALAVNRLAAVVYAASSDGLVNFWERDLKGGGLCHGGVLRGHKLAVLCLAVAGNLVFSGSADKNICVWKRDESGIHTCLSVLSGHTGPVKCLTVKEEEDRRQGQRRKGDQRWIIYTGSLDNSVKVWRVAENAPELKMIQGWPLPSHGGTPGRDNSSTAGSSPSSLPVTSAISGNFNNNLQININNINDVYPKRLQSQS | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g00556 | 532 | Gene3D | - | 324 | 516 | IPR015943 | GO:0005515 | |
| Arst3g00556 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 279 | 319 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 158 | 195 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 230 | 269 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 409 | 461 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 366 | 403 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 272 | 310 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 120 | 157 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | SMART | WD40_4 | 320 | 359 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | MobiDBLite | consensus disorder prediction | 59 | 88 | - | - | |
| Arst3g00556 | 532 | FunFam | BnaA09g28200D protein | 227 | 314 | - | - | |
| Arst3g00556 | 532 | SUPERFAMILY | WD40 repeat-like | 130 | 471 | IPR036322 | GO:0005515 | |
| Arst3g00556 | 532 | Pfam | Nucleoporin Nup120/160 | 129 | 282 | - | - | |
| Arst3g00556 | 532 | Gene3D | - | 118 | 232 | IPR015943 | GO:0005515 | |
| Arst3g00556 | 532 | MobiDBLite | consensus disorder prediction | 483 | 499 | - | - | |
| Arst3g00556 | 532 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Arst3g00556 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 373 | 403 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | Pfam | WD domain, G-beta repeat | 411 | 460 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | Pfam | WD domain, G-beta repeat | 371 | 403 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | Gene3D | - | 233 | 323 | IPR015943 | GO:0005515 | |
| Arst3g00556 | 532 | MobiDBLite | consensus disorder prediction | 473 | 499 | - | - | |
| Arst3g00556 | 532 | CDD | WD40 | 131 | 461 | - | - | |
| Arst3g00556 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 237 | 278 | IPR001680 | GO:0005515 | |
| Arst3g00556 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 237 | 274 | - | - | |
| Arst3g00556 | 532 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 70 | 466 | IPR045182 | - | |
| Arst3g00556 | 532 | PRINTS | G protein beta WD-40 repeat signature | 448 | 462 | IPR020472 | - | |
| Arst3g00556 | 532 | PRINTS | G protein beta WD-40 repeat signature | 256 | 270 | IPR020472 | - | |
| Arst3g00556 | 532 | PRINTS | G protein beta WD-40 repeat signature | 182 | 196 | IPR020472 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g00556 | Arst-Chr3 | 3866254 | 3868196 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g00556 | 238 | 460 | Miscellaneous Gene Families | AT5G08390 | 25.333 | 1.82e-08 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g00556 | - | - | adu:107476730 | 999.579 |