Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00542 ATGAGGATGGAGAAAAGGTTGTTACTTATGGGAATATGGGTAATGATGGGCATGGTCAAAAGTAATGGTTCTGTTGGTGACATAGTGACACAAGAATTCTTCAATGGTATTATTGATGAAGCTGATGATAGCTGTGCTGGGAAGAAGTTCTACTCCAGAGATGCATTCCTCAGTGCCCTCAATTCCTATGATCAGTTTGGTAACCTTGATACTCTTGATGACTCCAAGCGCGAGATTGCTGCTGCTTTTGCTCATTTCACCCACGAAACTGGACATTTTTGCTACATAGAAGAGATAGATGGTGCATCAAGGGACTACTGTGATGAAACAAACACAGAATATCCATGCAACCCAAACAAAGGGTATTATGGGCGTGGCCCAATTCAAATATCATGGAACTTCAACTATGGGCCTGCAGGGAAGAACATTGGGTTTGATGGGCTTAATGCACCTGAGACTGTGGCCAATGACCCTGTTGTGGCCTTCAAGACTGGACTATGGTATTGGATGGAGAATGTGAGACCTGTGGTTAGCCAAGGCTTTGGTGCAACCATTCGAGCCATCAATGGTCAACTTGAGTGTGATGGTGCTAACCCTACCACTGTTCAGGCTAGGGTTAATTATTACAAACAATATTGTTCACAATTAGGTGTTGACCCTGGTGATAATCTTACTTGCTAG 681 0.4347 MRMEKRLLLMGIWVMMGMVKSNGSVGDIVTQEFFNGIIDEADDSCAGKKFYSRDAFLSALNSYDQFGNLDTLDDSKREIAAAFAHFTHETGHFCYIEEIDGASRDYCDETNTEYPCNPNKGYYGRGPIQISWNFNYGPAGKNIGFDGLNAPETVANDPVVAFKTGLWYWMENVRPVVSQGFGATIRAINGQLECDGANPTTVQARVNYYKQYCSQLGVDPGDNLTC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00542 226 PANTHER CHITINASE-RELATED 21 226 - -
Arst3g00542 226 FunFam Endochitinase PR4 16 105 - -
Arst3g00542 226 Gene3D Endochitinase, domain 2 97 154 - -
Arst3g00542 226 CDD chitinase_GH19 29 226 - -
Arst3g00542 226 Pfam Chitinase class I 179 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst3g00542 226 Pfam Chitinase class I 28 175 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst3g00542 226 ProSitePatterns Chitinases family 19 signature 2. 160 170 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst3g00542 226 PIRSF Endochitinase 6 226 IPR016283 GO:0004568|GO:0005975
Arst3g00542 226 ProSitePatterns Chitinases family 19 signature 1. 45 67 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst3g00542 226 FunFam Endochitinase (Chitinase) 97 156 - -
Arst3g00542 226 SUPERFAMILY Lysozyme-like 24 226 IPR023346 -
Arst3g00542 226 Gene3D - 24 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00542 Arst-Chr3 3782399 3784421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00542 24 226 Glycoside Hydrolase AT3G54420 77.833 9.67e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00542 K01183 - gmx:100527091 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00542 3 3782399 3784421 Arst3g00542 3 3782399 3784421 ECH
Arst8g01490 8 24055569 24056827 Arst3g00542 3 3782399 3784421 PCT