Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00472 ATGATTACACCACAAATTCAAGTAACAAATTCTTCAAGCCCAACCTATCTCATATTTAACAAGCCAATAACAATAACAAGCCTCCATGGTGGTGGTGGTAGTATTAGTATCTACCCTTCTTTTAGGGTTAGGACTAGTAGGCCAATATCATTCCCAAACCATAGAAGGTGTAATAGTAGCAAAACAATCAAAGCTGTGGCTATGACTGAAGAAGAGAATAAGAAATCAATAATGAAGTTTAAAGCCACCATAAGAGTTCAACCAACCGTTGGAGGGATATTTTCGGAAATGGCCATAGAACGAGGGCTTGATGATATAACTGATTTGTTTGGTAAATCATTACTCTTGGAGCTTGTTAGCTCAACCCTTCATCAAACGACGGCGCTGGAGAAGGAAACCATAAGCGGTTACGCCCACAGGACGGTTCAAACAGCAGAGGAGGTCAAGTATGAGGCTGAGCTTGCGGTGCCACCTGGTTTCGGAGAGATTGGTGCCATTTTCGTGGAGAATGAGCACCGCAGAGAGATGTTCATTAAGGATATTGTCCTTCATGGCTTTGAAACTGGTCCCCTTCGCTTCTCTTGCGACTCTTGGGTTCATTCCAAGTTTGACAACCCCGTTAAGAGGCTCTTTTTCACCAACAAGTCATATTTGCCATCAGACACACCAGAAGGATTGAAGAGGCTAAGGGGAGAGGAGCTACAGCTTCTCAGAGGGAATGGCCATGGCGAACGCAAGACCTTCGACCGCATATACGATTACGATGTCTACAACGACCTTGGAGATCCAGACAACGATATCCAACTCAAGAGACCTGTTCTTGGTGGCAAACACAATCCATATCCACGTCGTTGCAGAACTGGAAGACCACGCTCTAAAGCAGACCCGTTATCGGAGGAAAGGAGTAGCAGCATCTATGTGCCAAGGGACGAAAGCTTCTCAGAAGTGAAGCAGTTAACGTTCTCGGCGAAGACGGTGTACTCGGTGCTGCACGCGGTGGTGCCGGCGGTACAGACGGTGATAGTTGACAGGGATCTAGGATTTGAATTGTTCTCACACATAGATGATCTTTTCCATGAAGGGATTGGCTTGCCTCCTTCAAAGAACAAAGGAGTTCTGAGGAACATGTTACCCAGGCTTATCAAGTTCATCAACGAAACCCAAGACGACCTTCTCCGTTTTGAGCCTCCCGCACCCATGGACAGGGACAGGTTCTTTTGGTTTAGGGACGAAGAATTTGGAAGACAAACTCTTGCGGGTCTCAACCCATGTTGTATACAACTCGTCACGGAATGGCCATTGAAGAGCAAACTGGACCCAAATGTTTATGGGCCTGCAGAATCAGCAATTACGAAAGAACTAGTTGAAAAGGAAATCAGAGGATTCTGTACGGTGGAAGAGGCTATAGAAGCCAAGAAATTGTTCGTATTGGACTACCACGATTTACTATTGCCAGTGGTAGAGCAAGTAAGGGAGCTTCAAGGGACAACACTCTATGGATCTAGGGCACTCTTCTTTCTTACAGCTGAAGGCACACTGCGCCCACTCGCTATCGAGCTTGTTCGCCCTCCCATCAATGGAAAGCCTCAGTGGAAGCAAGTCTATACCCCCACGTGGCACTCTACCGGCGTTTGGCTTTGGAGGCTTGCCAAGGCTCATCTTCTTGCTCATGACTCTGGTTACCACCAACTTGTTAGTCACTGGCTACGAACTCATTGTTGCACAGAACCTTACATAATAGCAACGAACAGGCAATTAAGTGCAATGCACCCAATCTATAGGCTTTTAAATCCGCACTTCAGATACACAATGGAGATCAATGCACTTGCACGTGAAGCCCTAATCAATGCAGATGGGATCATAGAAACAAGCTTCACTCCCAAGAAATACTCAATCCTTCTAAGTTCCATTGCTTACGACAAACACTGGCAATTCAACTTACAATCCCTCCCCAATGACCTCATCCACAGGGGGATGGCGGTTAAAGACGATAATGCCCCTCATGGTTTGAGGCTCACCATTGAGGACTACCCTTATGCCAATGATGGACTCGTCCTTTGGGATGCTCTCAAAGGATGGATCACTGATTATGTTGACCGCTATTACTCCGATTCCGATCTTGTCCGCTCCGATGAGGAACTCCAGGCGTGGTGGCACGAGATCAAGAATGTTGGACATGGCGACAAGAAAGACGAGCCCTGGTGGCCGCTTTTGAACACCAAAGAGGATCTTGTTCAGATTCTCACCACCATTGTTTGGATAGCTTCTGGCCACCACGCTGCCGTCAACTTTGGCCAATATGATTATGCAGGGTATTTTCCAAACAGACCGACAATTGCAAGGAAGAAGATGCCAACAGAGGATCCAACAGAAGAGGAATGGGAAGAATTCATGGAGAAGCCAGAAATGGCATTGTTAAAGTGCTTCCCATCACAGATCCAAGCGACAACAGTGATGGCAGTGTTAGACATATTGTCAAGCCACTCGCCAGAGGAAGAGTATTTGGGTGAAACCATAGAGCCATCATGGGAAGAAGACCCAATTGTAAAAGGAGCGTTTGAGAAGTTCAAAGGGAAGTTGTTGGAACTTGAAGAAAATGGTGCTGGAATGTTGCCGTATCAGCTTCTCAAACCAGTTTCGGAGCCTGGTGTTACTGGTAAAGGAGTTCCATATAGTATCTCTATTTGA 2688 0.4632 MITPQIQVTNSSSPTYLIFNKPITITSLHGGGGSISIYPSFRVRTSRPISFPNHRRCNSSKTIKAVAMTEEENKKSIMKFKATIRVQPTVGGIFSEMAIERGLDDITDLFGKSLLLELVSSTLHQTTALEKETISGYAHRTVQTAEEVKYEAELAVPPGFGEIGAIFVENEHRREMFIKDIVLHGFETGPLRFSCDSWVHSKFDNPVKRLFFTNKSYLPSDTPEGLKRLRGEELQLLRGNGHGERKTFDRIYDYDVYNDLGDPDNDIQLKRPVLGGKHNPYPRRCRTGRPRSKADPLSEERSSSIYVPRDESFSEVKQLTFSAKTVYSVLHAVVPAVQTVIVDRDLGFELFSHIDDLFHEGIGLPPSKNKGVLRNMLPRLIKFINETQDDLLRFEPPAPMDRDRFFWFRDEEFGRQTLAGLNPCCIQLVTEWPLKSKLDPNVYGPAESAITKELVEKEIRGFCTVEEAIEAKKLFVLDYHDLLLPVVEQVRELQGTTLYGSRALFFLTAEGTLRPLAIELVRPPINGKPQWKQVYTPTWHSTGVWLWRLAKAHLLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPIYRLLNPHFRYTMEINALAREALINADGIIETSFTPKKYSILLSSIAYDKHWQFNLQSLPNDLIHRGMAVKDDNAPHGLRLTIEDYPYANDGLVLWDALKGWITDYVDRYYSDSDLVRSDEELQAWWHEIKNVGHGDKKDEPWWPLLNTKEDLVQILTTIVWIASGHHAAVNFGQYDYAGYFPNRPTIARKKMPTEDPTEEEWEEFMEKPEMALLKCFPSQIQATTVMAVLDILSSHSPEEEYLGETIEPSWEEDPIVKGAFEKFKGKLLELEXENGAGMLPYQLLKPVSEPGVTGKGVPYSISI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00472 896 CDD PLAT_LH2 78 214 IPR042057 -
Arst3g00472 896 PRINTS Plant lipoxygenase signature 209 230 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 280 299 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 431 450 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 392 408 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 822 836 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 499 523 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 345 366 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 183 201 IPR001246 GO:0016491
Arst3g00472 896 PRINTS Plant lipoxygenase signature 248 264 IPR001246 GO:0016491
Arst3g00472 896 ProSiteProfiles PLAT domain profile. 93 213 IPR001024 GO:0005515
Arst3g00472 896 SUPERFAMILY Lipoxigenase 218 896 IPR036226 -
Arst3g00472 896 Gene3D - 335 423 IPR027433 -
Arst3g00472 896 Gene3D PLAT/LH2 domain 73 235 - -
Arst3g00472 896 Gene3D - 236 334 - -
Arst3g00472 896 Gene3D - 559 894 - -
Arst3g00472 896 FunFam Lipoxygenase 541 895 - -
Arst3g00472 896 PRINTS Lipoxygenase signature 562 579 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 PRINTS Lipoxygenase signature 582 602 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 PRINTS Lipoxygenase signature 544 561 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 ProSitePatterns Lipoxygenases iron-binding region signature 1. 562 576 IPR020833 GO:0016702|GO:0046872
Arst3g00472 896 Pfam Lipoxygenase 225 866 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 Pfam Lipoxygenase 225 866 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 SMART LH2_4 78 214 IPR001024 GO:0005515
Arst3g00472 896 FunFam Lipoxygenase 424 558 - -
Arst3g00472 896 Pfam PLAT/LH2 domain 147 212 IPR001024 GO:0005515
Arst3g00472 896 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 216 896 IPR013819 GO:0016702|GO:0046872
Arst3g00472 896 MobiDBLite consensus disorder prediction 278 301 - -
Arst3g00472 896 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 79 217 IPR036392 GO:0005515
Arst3g00472 896 Gene3D - 424 558 - -
Arst3g00472 896 ProSitePatterns Lipoxygenases iron-binding region signature 2. 589 599 IPR020834 GO:0016702|GO:0046872
Arst3g00472 896 PANTHER LIPOXYGENASE 87 896 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00472 Arst-Chr3 3280306 3288012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g00472 156 896 Acyl Lipid Metabolism Gene Families AT3G45140 59.103 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00472 K00454 - gmx:100787202 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00472 3 3280306 3288012 Arst3g00472 3 3280306 3288012 ECH