Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00277 ATGGATAGAAACAGAGCGAAAGGCATTACTTTCACGAAGGAACCGTACATCGAAGATGCAGGGCCACGCATTGTGAAGAGCATGAAGTTCAGTTCCTTATCTGACTCTGAGATTGGAAAACTCGCTGAAGTTCAAGTCTTCAAAGGCTCTTACTATGATCACTTCAAAAAACCCATTCCTGGTGGCTTGTTGGATCCTCGCATGGGTCCTGCTAATAAGGAGCTTATTTGCGCGACATGCGGTGGTGACTTTGCTCATTGTCCGGGCCACTTCGGATACTTAACTCTTGCCCTTCCCATCTTCAATATTGGATTCTTGGGTACCATTGTGGAAATATTGAAGTCCATTTGCAAGTGCTGTGCTCGAATTCTTCTCAACGAAGATATACGTAAAGATCGTTTGAAAAAAATGAGAAGACCCAGAATTGATGCACTGGCGAAGGCTGAATTAGCGAAAAAGGTTGTAGAGGCATGCAGCAAAGTATCAATGTGCTCGAGATGTGGATATAAGAATGGTTCGGTAAAGAAGCTTGTGGGTTCGCTAAAAATCACTCATGATCGCTCAAAATGTAATGATAGTAGCATTGAAGAATTTCAAACAGCACTTTCACATGCAAGAGAATCTAGATTGACCAGCGCTGTGGATACTCATATTCTAAACCCATTCCAAGCTTTATCCCTGTTTAAAAGGATGCTGGATGAGGACTGTGAATTACTTTATCTTGCTGAAAGACCGGAGAAACTCATCATTACAAACATTGCAGTGCCCCCATTGGCTATGCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGATGTAACAGAGAGGCTAAAGCAAATAGTCCAAGCTAATGCTCATGTGCGCCAAGAATTAGAAGAAATTGCTTCATTAAGATCTCTGGATGGTTGGGAAACGCTTCAATTTGAGGCTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATACCACCAGCAACGGGAAAAGACAATGGCGGGTTTAGTTCAACGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCGGATCCTAATTTAAAGATTACTGAGGTTGCAATACCCATGCTTATGGCTCGTATATTGAGTTATCCTGAACGTGTTTCACATCACAACATTGAAAAGCTGAGACAGTGTATAAGAAATGGTCCTGATAAGTATCCTGGTGCAAGACAGTATAGAGATGCCTCGGGTTCCACATGGACCTTAAGAGTTCCTCACAGGAAGCGCTTTGCAGACCAGCTGAAATTTGGTGATATAGTTGATCGTCATTTGGAAGATGGCGACATTATTCTTTTTAATAGGCAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCGAGGATCATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTTTGCAACCCATATAATGCTGATTTTGATGGTGATGAGATGAACTTACATGTGCCACAGACTGAGGAAGCACGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAATAATCTGTGCACACCAAAAAATGGCGAAATTTTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTATCTCATAACTAGAAAAGATACATTTTATGATCGTTCAACCTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCTTGTTGATCTGCCAACTCCCGCAATTATTAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCATTCTATTGCGCCCAAATGCAAATGTGAGGGTCTATGTGAATCTTACTGTTAAGGAGAAAATATACAGTACAAAGCTTGATGACAAGAAACGAGAAATGAAAACGATGTGCCCAAGTGATGGGTTTGTCTATTTTCGCAATAGTGAGTTGATATCAGGACAACTTGGAAAGGTGACTTTAGGGAATGGAAATAAGGATGGTCTTTTCTCTGTGCTACTAAGAGACTATAAACCACATGCTGCTGCTGCTTGCATGAATCGTGTAGCTAAATTGAGTGCTCGATGGATCGGAAATCATGGGTTCTCAATTGGCATTGATGATGTCCAACCAAAAGAGGTTTTGATAGAACAGAAAGATAAAACAATATCTGATAATTATAAAAAATGTGATGATTTTATAGCAGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAGACATTAGAAACTCTGATAACTGGTGTCTTGAATGGTATACGAGATACAGCAGGAAAGGTTTGCATGCAAACCCTACACTGGAGAAATAGCCCACTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCAATTAATATCAGTCAGATGGTTGCTTGTGTGGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGTTTCGTGGACCGTAGTCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCAGCCGCTAAAGGTTTTGTTGCCGAATCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGTGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGATTAATGAAATGTCTGGAGGATTTGTTCTTACAGTATGATTACACTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCACTAAATTTTGACCGGCTGTTTTTGAGAAGCCAGGCCATATGTCCAAGTGATGAAGACGATGATATCTTGTCTCCCTCAGATGTGCATGAAGTAGTTCAAAGGAAGCTTTCAGAAGTTGGTATGTGCAAGTTAGTCAAGCAAGAGGCTTCAGCGGATGATTCCTCTGCCGGCTTCGTAAATTCTCTTCAATCCTTTGTCAAAGGGAAAATAGAATCAACAGAACCTTCCACCAAAGAGGATTCTGAAAAGCTGAAAAAGTTTATTCAGAGGATTTCTGGGATTACTCGCAGACAACTAGAGGTTTTTCTCGATATTTGTTTATCTCGTTACCATTCAAAAAAAATTGAGGCTGGAACTCCCATCGGAGCAATTGGAGCTCATAGTATTGGAGAGCCTGGAACCCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACCCTTGGAGTTCCTCGCATCAAAGAAATTATAAATGGATCCAAAAAGATCAGCACACCAATCATCACTGCAATACTTGAGACAGATAATAATCCAAATACCGCAAGGATAGTAAAAGGTCGCATAGAAAAAACCAACTTAGGCCAGGTCGCAAAGAGTATAAAAGTTGTTATAACTTCAAGATCAGCATCAATTGTCATCTCGCTTGACATGGAAAGAATTCGAGATGCACATCTGCATGTAGATGCCAATATTGTAAAAGAGTCGATTTTGCATACTCCAAAACTAAAATTGAAGCAAGACAATGTTAAGATCTTAGATATCAAAAAGCTCAGGATTGTTCCCCCAGATGGTGATAGAAGTAAAATCCAATTTCAACTTAACCATCTTAAAAATTTGCTTCCTTCAGTTGTTGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGGCAAAAACTGAAAAGTTCAAATTACTGGTGGAAGGCACGGGTCTTCTAGATGTTATGGGAATTGAAGGGGTTGATGGACTTAATACTCTTAGTAATCATATAGATGAAGTGAGTGAGTCTCTGGGAATTGAAGCTGCTAGAAGGACTATCATTGAGGAGATAAAAGTAGTTATGGGAAGTCACGGTATGAGTATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGTTATGGGCAGAGTCCTTGGAATAACCAGATTCGGAATTCAAAAGATGGGCAAAAGTGTATTGATGCTTGCGTCTTTTGAGAGGACATCGGATCATCTTTTCAATGCAGCGGTACATGGGACAGAGGACCTGATTGAAGGAGTGAGTGAACGTGTAATCATGGGTATACCGATCCAGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGAGTCCTCCAGAGTTGCTTCAAGGAACTCCTCCTATTCTATCTTATGTTTGA 4176 0.4107 MDRNRAKGITFTKEPYIEDAGPRIVKSMKFSSLSDSEIGKLAEVQVFKGSYYDHFKKPIPGGLLDPRMGPANKELICATCGGDFAHCPGHFGYLTLALPIFNIGFLGTIVEILKSICKCCARILLNEDIRKDRLKKMRRPRIDALAKAELAKKVVEACSKVSMCSRCGYKNGSVKKLVGSLKITHDRSKCNDSSIEEFQTALSHARESRLTSAVDTHILNPFQALSLFKRMLDEDCELLYLAERPEKLIITNIAVPPLAMRPSVIMDGSQSNENDVTERLKQIVQANAHVRQELEEIASLRSLDGWETLQFEAAQFINSEVRGIPYHQQREKTMAGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPMLMARILSYPERVSHHNIEKLRQCIRNGPDKYPGARQYRDASGSTWTLRVPHRKRFADQLKFGDIVDRHLEDGDIILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSILLRPNANVRVYVNLTVKEKIYSTKLDDKKREMKTMCPSDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKPHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPKEVLIEQKDKTISDNYKKCDDFIAAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVAESFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCLEDLFLQYDYTVRNAAGGIVQFCYGDDGMDPAGMEGKDGKPLNFDRLFLRSQAICPSDEDDDILSPSDVHEVVQRKLSEVGMCKLVKQEASADDSSAGFVNSLQSFVKGKIESTEPSTKEDSEKLKKFIQRISGITRRQLEVFLDICLSRYHSKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGSKKISTPIITAILETDNNPNTARIVKGRIEKTNLGQVAKSIKVVITSRSASIVISLDMERIRDAHLHVDANIVKESILHTPKLKLKQDNVKILDIKKLRIVPPDGDRSKIQFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKEAKTEKFKLLVEGTGLLDVMGIEGVDGLNTLSNHIDEVSESLGIEAARRTIIEEIKVVMGSHGMSIDIRHMMLLADVMTVMGRVLGITRFGIQKMGKSVLMLASFERTSDHLFNAAVHGTEDLIEGVSERVIMGIPIQIGTGMIKVKQRLSPPELLQGTPPILSYV 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00277 1391 Pfam RNA polymerase Rpb1, domain 5 840 1323 IPR007081 GO:0003677|GO:0003899|GO:0006351
Arst3g00277 1391 Gene3D - 820 878 - -
Arst3g00277 1391 Pfam RNA polymerase Rpb1, domain 3 523 702 IPR007066 GO:0003677|GO:0003899|GO:0006351
Arst3g00277 1391 Gene3D RNA polymerase Rpb1, domain 3 528 701 IPR042102 -
Arst3g00277 1391 FunFam DNA-directed RNA polymerase subunit 1322 1379 - -
Arst3g00277 1391 Gene3D RNA polymerase II, clamp domain 15 139 IPR044893 -
Arst3g00277 1391 Gene3D - 702 819 IPR038120 -
Arst3g00277 1391 PANTHER DNA-DIRECTED RNA POLYMERASE 30 1373 IPR045867 GO:0003899|GO:0006351
Arst3g00277 1391 PANTHER DNA-DIRECTED RNA POLYMERASE 30 1373 IPR045867 GO:0003899|GO:0006351
Arst3g00277 1391 Gene3D - 880 930 - -
Arst3g00277 1391 FunFam DNA-directed RNA polymerase II subunit RPB1 424 527 - -
Arst3g00277 1391 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1373 - -
Arst3g00277 1391 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1373 - -
Arst3g00277 1391 CDD RNAP_III_RPC1_N 33 890 IPR035697 -
Arst3g00277 1391 FunFam DNA-directed RNA polymerase subunit 528 701 - -
Arst3g00277 1391 FunFam DNA-directed RNA polymerase subunit 704 819 - -
Arst3g00277 1391 Gene3D - 1321 1377 - -
Arst3g00277 1391 SMART rpolaneu7 246 548 IPR006592 GO:0003677|GO:0003899|GO:0006351
Arst3g00277 1391 Gene3D RNA polymerase ii 387 447 - -
Arst3g00277 1391 CDD RNAP_III_Rpc1_C 1027 1369 IPR035698 -
Arst3g00277 1391 Gene3D - 345 527 - -
Arst3g00277 1391 Pfam RNA polymerase Rpb1, domain 2 354 520 IPR000722 GO:0003677|GO:0003899|GO:0006351
Arst3g00277 1391 Pfam RNA polymerase Rpb1, domain 4 731 833 IPR007083 GO:0003677|GO:0003899|GO:0006351
Arst3g00277 1391 Pfam RNA polymerase Rpb1, domain 1 24 352 IPR007080 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00277 Arst-Chr3 2054222 2066864 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00277 K03018 - gmx:100811292 2144.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00277 3 2054222 2066864 Arst3g00277 3 2054222 2066864 ECH