Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00265 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACCGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAAAAGGATGACACAGAGGGTCGATGCCCTGCATGTCGTTCCCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAGATTCATATGGAGAAAAAGATGAAGAATCAGAAAGCAAAGACTAAATCTTCTGATGGCAGGAAGCAGCTCAGTAGCGTGCGAGTGATTCAGCGCAACCTTGTTTACATAGTTGGGTTGCCTCTCAACTTGGCAGATGAAGAACTTCTCCAGCGCCGAGAATATTTTGGTCAGTACGGGAAGGTCTTAAAAGTGTCGATGTCGCGGACAGCTGCTGGTGTTATTCAGCAGTTTCCAAATGAGACATGCAGTGTATATATTACTTATTCAAAGGAGGAAGAAGCAATTCGCTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTCTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCAGCAATCCTGATTGTTTATACCTACATGAGGTTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACCAGTCGAGTTCAGCAAATCACTGGTGCCACAAACAACATGCAAAGGAGGTCGGGGAGTATATTACCTCCACCGTTTGATGATGGCATGAATAACTCCTTGGCAAAGCCTATTGTTAAAAATGCTTCAAGTAACTCTGTATGCACGGTAAGAGGTTCACCTCCTAATGGATTTTGTGGGAGACCTGGAGCTCTTCCTTCTAGTTCTTCATGGGGAACCCAAACTACAAATTGTCAGCCCTCTGCGGGAGGTCAATCATGTCAAAATGGACCAGCCAAGGCAAAACCTGATACAGTTGGCAGCTCACTACCTTTTTCAGCTGCTGTTGTTGGTACAGTTCAGGCTTCTGCATTGCATTGTGATGTGACAAAAAGGCCACCATCAGGTGATGGGAGTCATGGTATGCCTGGAGTGAAAAATGGGCTGTTGAAACCCATTAAACAATACAATAGTGTCGACATTGTGGCTAGTACAGGTGATAAAACTTTGGCTTCGGATATTTCTCCCGTGCCTACAAAATTGAATAGCCAGTTGTCTTCTCTGACTTCTCAAGATAGTGATAGAGGTAGTTGTACTACACTAAACACCGTAAATTCCACTTACATCACTGGACAATCATGCAGCTCTGGTCCTGAGGAAGCAGTTACTGCTACCAATGAAGAGATTCAGAATTTGTCCTGTGAGTTATCCTCCATTGACATTGATGGAGATGCTGCAAAAGAAAATTCCAGCATAACCAAACCTAGTAGCCCGCCTTCTGATTTCTTGATTAAATCTCCTGAAATTCAAGGAACACAGCATAATGTTGACAAGTTTAGAGATTTAATAACTTCAAATGAGGCTGGTAAAGGTGCTAGCTCAGATAATGGGGTTTGTAGTTCAAGGGAACATTTAGATTGGAGATTGGATTCTCATTCACAATTAGTTTCAGATAGTGTTGAAGATGATGTAGCATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTGTTTGCCGATCTTATTTGCCAAAGTCAACTAGTTTCCTTCATGTATCAAGCCATTCTAGCCCTCATCTTCAGCAGCTTGGTGAATCATGTACTGGTGCAAATGCTGGTTCTGTGTCAGCTAATGAAAGAGATGGGAATGAATATCTTTCAAATTCCTCTGTATATAGTGGATACCCTGAAAAATTGGTCAGCAGCAGTTCTTATGGTTTCCTTGATGAAAGGAACAGACAAAGCATTGGAAGATTAGTTAGTGAAGCAGTTAATACTGGACGAGATTGTGCTATTGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCTATGGACTTGGATCCATGGGATGATTCAATGACATCACCGCATAATTTAGCTAAGTTGTTGGGTGACAACACTGAAAACCAGTCTGGTTCGATGAAGAAATCTAGCTCCTGGAAAGTTCAGAGTAATAATCAATCTAGATTCTCTTTTGCGAGGCAGGAGGAATCCAAATTTCAATCCCATGATGTGCATCCATCTTATGGTGTGAGCCAACCACAGCTAAAGACGTCCTCGGTCATCCATGATTTTGTGGAAGGAGATTACTATATGGATAAATTGGGCATAGCAAATGGTTTTTCCACAAGTAATTTTGAGGATGCTGAAAATATCAGCAGTGGTCATTTTCTTCACTCTAATAACAAGCTTTCAGCTGTTTCAAGAGCACAGGTTTCAGCCCCACCAGGATTTTCAGTTCCAAGCAGGCCGCCACCACCGGGCTTTTCTTCTCATGAGAGAGTGGAGCAGGCTTTTGACTCGATGCCTGGGAATTCATTGCTTGACCATTCCTCTTTTTTGAGAAATTCATATCAAACAGCCCCAACTGGAAATATCGGTGGTGCAGGGGATATTGAATTTATGGACCCTGCTATTTTGGCTGTTGGTAAAGGGAGATTTCAAGGGGCACTAAACACCCCAGCACTTGACATGCGATCTAATCTCATGCCACAGTTAAATTACTTCGACAATAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCACAGCCTCAACAGAATCTTCGATTTCCGGATATTGGGAATACCTTTTCTCAGCTTGGAGATTCTTATGGTATATCTTCAAGGTTAGACCAATCCCAGGTCAGTAATATTTCCCCATACCCTCAGATGTCTCTGCAGCAATCTACGAATGCAGTCATGTCAAATGGGCAGTGGGATGGGTGGAATGAGATGCAAAGTGGAAATAATCTAGGCGTGGCTGAACTTTTGAGAAATGAAAGATTTGGATTTAATAAATTTTACTCGGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGTGATCTGTACAATAGAACATTTGGGATGTGA 3075 0.4182 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEIHMEKKMKNQKAKTKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEELLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSQEDSFTKDEIISAYTSRVQQITGATNNMQRRSGSILPPPFDDGMNNSLAKPIVKNASSNSVCTVRGSPPNGFCGRPGALPSSSSWGTQTTNCQPSAGGQSCQNGPAKAKPDTVGSSLPFSAAVVGTVQASALHCDVTKRPPSGDGSHGMPGVKNGLLKPIKQYNSVDIVASTGDKTLASDISPVPTKLNSQLSSLTSQDSDRGSCTTLNTVNSTYITGQSCSSGPEEAVTATNEEIQNLSCELSSIDIDGDAAKENSSITKPSSPPSDFLIKSPEIQGTQHNVDKFRDLITSNEAGKGASSDNGVCSSREHLDWRLDSHSQLVSDSVEDDVASFDNQRLKDPEVVCRSYLPKSTSFLHVSSHSSPHLQQLGESCTGANAGSVSANERDGNEYLSNSSVYSGYPEKLVSSSSYGFLDERNRQSIGRLVSEAVNTGRDCAIDKGESSIISNILSMDLDPWDDSMTSPHNLAKLLGDNTENQSGSMKKSSSWKVQSNNQSRFSFARQEESKFQSHDVHPSYGVSQPQLKTSSVIHDFVEGDYYMDKLGIANGFSTSNFEDAENISSGHFLHSNNKLSAVSRAQVSAPPGFSVPSRPPPPGFSSHERVEQAFDSMPGNSLLDHSSFLRNSYQTAPTGNIGGAGDIEFMDPAILAVGKGRFQGALNTPALDMRSNLMPQLNYFDNNEARLQLLMQRSLSQPQQNLRFPDIGNTFSQLGDSYGISSRLDQSQVSNISPYPQMSLQQSTNAVMSNGQWDGWNEMQSGNNLGVAELLRNERFGFNKFYSGYDDSKYRMPNSGDLYNRTFGM 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00265 1024 Gene3D - 111 192 IPR012677 -
Arst3g00265 1024 SMART rrm2_1 111 192 IPR003954 GO:0003676
Arst3g00265 1024 SMART rrm1_1 111 192 IPR000504 GO:0003723
Arst3g00265 1024 CDD RRM_CNOT4 105 204 IPR034261 -
Arst3g00265 1024 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Arst3g00265 1024 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Arst3g00265 1024 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Arst3g00265 1024 MobiDBLite consensus disorder prediction 296 334 - -
Arst3g00265 1024 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Arst3g00265 1024 MobiDBLite consensus disorder prediction 301 327 - -
Arst3g00265 1024 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1018 IPR039780 GO:0004842|GO:0030014
Arst3g00265 1024 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1018 IPR039780 GO:0004842|GO:0030014
Arst3g00265 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Arst3g00265 1024 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Arst3g00265 1024 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Arst3g00265 1024 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Arst3g00265 1024 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Arst3g00265 1024 SUPERFAMILY RING/U-box 3 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00265 Arst-Chr3 1942587 1949200 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00265 K10643 - gmx:100813427 1527.3