Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00162 ATGGCCTCCGCAAACGCTCTCTCCTCCGCCTCCCTCCTTCGCTCTTCTAACCGCCAGAGTTTAAGCAGCAACAGGAGGCTGAACCACCAAAACAATGGCAGAGTCAATTACCGTCGCTTCTCCGTCAGAGCCTCCGCCAAGGAGATTGCCTTCGACCAGAGCTCACGCGCCGCCATTCAAGCCGGTATCGATAAGCTCGCCGACGCCGTTGGTCTCACCCTCGGTCCCAGGGGGAGGAATGTTGTGTTGGATGAGTTTGGAAACCCTAGAGTTGTTAACGATGGTGTCACCATTGCTCGAGCTATTGAGCTCCCTGATGCCATGGAGAACGCCGGAGCTGCTCTCATTAGGGAGGTTGCTAGCAAGACTAATGACTCAGCTGGCGATGGGACAACGACTGCTTCGGTTCTTGCTAGGGAGATAATTAAGCTTGGACTGCTCAGTGTGACCTCTGGTGCTAACCCTGTGTCTCTCAAGAGAGGAATTGATAAAACTGTTCAGGGTTTGATTGAGGAGCTTGAGAAGAAGTCCAGGGCTGTCAAAGGAGGAGATGACATCAAAGCCGTTGCTTCTATCTCCGCGGGAAATGATGAGTTGATTGGGCAAATGATTGCTGAGGCAATTGACAAGGTTGGACCAGATGGCGTGCTATCCATTGAGTCTTCATCCTCATTTGAGACTACTGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCCCCTCAATTTGTTACAAACCCTGAGAAGTCGATTGTTGAATTCGAGAATGCGAGAGTCTTGATTACAGATCAGAAGATTTCGGCAATTAAGGATATAATTCCACTGTTGGAGAAAACAACTCAATTGAGAGCTCCCTTGCTTATCATCGCCGAGGATGTCACTGGGGAGGCTTTGGCTACCCTTGTTGTGAATAAGCTGCGGGGCATTCTTAACGTTGCTGCCATCAAAGCTCCCGGTTTTGGTGAGCGCAGAAAGGCCCTACTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCCTCTGATCTGGGATTACTTGTTGAGAACACTTCAGTTGAGCAGCTTGGTATCGCTCGCAAAGTAACCATCTCCAAGGATTCTACAACTATGATCGCTGATGCTGCATCAAAAGATGAGTTGCAAGCTAGGGTTGCACAACTAAAGAAGGAGCTGTCAGAGACAGATTCAGTTTATGATACAGAGAAATTATCAGAGAGAATCGCCAAGTTGTCTGGTGGAGTTGCAGTCATCAAGGTCGGTGCTGCCACAGAGACTGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCAACCTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGCGGAGGCACTGCATTGGTTCACCTTTCTGATTTTGTACCAGCAATCAAGGACAAGCTTGAAGATGCTGATGAAAGATTAGGAGCTGACATTGTTCAGAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGTATAGAAGGTGAAGTAGTGGTGGAGAAGATAAAGAACAGTGAATGGGAGGTTGGTTACAATGCCATGACAGACAAATATGAGAATTTGGTGGAGGCTGGAGTCATTGACCCTGCAAAGGTGACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTTTTGACCACACAGGCCATTGTTGTTGAGAAGCCTAAGCCCAAGGCACCTGTTGCTGCTCCTCCGCAAGGCCTCACTGTTTGA 1755 0.4832 MASANALSSASLLRSSNRQSLSSNRRLNHQNNGRVNYRRFSVRASAKEIAFDQSSRAAIQAGIDKLADAVGLTLGPRGRNVVLDEFGNPRVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLIEELEKKSRAVKGGDDIKAVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGIARKVTISKDSTTMIADAASKDELQARVAQLKKELSETDSVYDTEKLSERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSDFVPAIKDKLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIKNSEWEVGYNAMTDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAAPPQGLTV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00162 584 Gene3D - 49 566 IPR027413 -
Arst3g00162 584 Pfam TCP-1/cpn60 chaperonin family 66 569 IPR002423 GO:0005524
Arst3g00162 584 Gene3D GroEL 234 415 IPR027409 -
Arst3g00162 584 Gene3D - 179 452 IPR027410 -
Arst3g00162 584 MobiDBLite consensus disorder prediction 1 34 - -
Arst3g00162 584 FunFam 60 kDa chaperonin 234 415 - -
Arst3g00162 584 SUPERFAMILY GroEL apical domain-like 226 418 IPR027409 -
Arst3g00162 584 NCBIfam chaperonin GroEL 46 570 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 SUPERFAMILY GroEL equatorial domain-like 50 565 IPR027413 -
Arst3g00162 584 ProSitePatterns Chaperonins cpn60 signature. 447 458 IPR018370 GO:0005524|GO:0006457
Arst3g00162 584 Hamap Chaperonin GroEL [groEL]. 45 582 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 Coils Coil 381 401 - -
Arst3g00162 584 PRINTS 60kDa chaperonin signature 392 417 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 PRINTS 60kDa chaperonin signature 125 152 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 PRINTS 60kDa chaperonin signature 70 96 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 PRINTS 60kDa chaperonin signature 440 461 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 PRINTS 60kDa chaperonin signature 310 333 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 SUPERFAMILY GroEL-intermediate domain like 180 244 IPR027410 -
Arst3g00162 584 CDD GroEL 47 567 IPR001844 GO:0042026|GO:0140662
Arst3g00162 584 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 36 574 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00162 Arst-Chr3 1150138 1153295 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00162 - - gmx:100775463 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00162 3 1150138 1153295 Arst3g00162 3 1150138 1153295 ECH