Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g00090 ATGGCTCCGATTCCGTCAGAGAACGGTGTAGATGGAGACGACGAGAGAGAAGAAGAGGAAGAGGAAGAAGTTGAAGAAGACGAAGAAGAGGAGGAGGAAGAAGAAGATGAAGAGGAGCCACGGCTTAAGTACCAGAGAATGGGAGGGAGCATACCTACGATGCTTGCCACCGATGCTGCGTCATGCATCGCCGTCGCCGAGCGGATGATCGCGCTCGGCACTCAGGGCGGCACTGTTCACATCCTCGATTTTCTCGGCAATCAGGTGAAAGAATTTGCCGCCCATGCTTCCGTTGTCAACGACCTTAGCTTTGACATAGAAGGGGAATTTATTGGAAGCTGTTCTGATGATGGATCAGTTGTTATAAACAGTCTCTTCACCGATGAGAAAATGAAATTCGAGTACCAACGACCAATGAAAGCGATTGCATTGGACCCAGAATATGCAAGGAATGCGTCTAGGAGATTTGTTGCTGGTGGTTTAGCAGGTCATTTGTATTTAAATTCGAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCATACCGGGGAAGGCCCAATACATGCTGTGACATGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGGGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATCGAAAGACCGCGAGGAAGCCCACGTCCTGAGCTTCTGCGTCCTCACTTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTGAAAATTGTTTCTCTAAGGACAAATAACCATAAAGCAGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTATGGTACAGGTTGATATTATGGCATCCTTTCAGACTGGCTATTTCATATCAGGCATTGCCCCCTTTGGTGATGTATTGGTAGTTCTAGCTTATATTCCTGGAGAGGAAGATGAAAATAAGGATTTTAGTAGTACCGCTCCTTCGCGGCAGGGCAATGCACAAAGGCCAGAAGTTAGAATAGTATCATGGAATAATGATGAACTTTCAACTGATGCTCTACCGGTACATGGGTTTGAGCATTACAAGGCGAAAGACTATTCTCTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCCCCAAAAGATGTAGTTATTGCAAAGCCAAGGGATACGGAAGATCATATTGCTTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGCAGTTGAATCTGGTCAGGGACGCAGTGAACTACTTGATGAGGTAGGATCGAGGTACCTAGATCATTTGATTGTGGAACGAAAATATGGTGAAGCAGCTTCTCTATGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAGAGATGGGTATTTCACTTTGCCCACCTTCGTCAACTCCCTGTTTTGGTTCCTTACATGCCAACAGAAAACCCTAGACTACGTGATACTGCTTATGAGGTTGCCCTTGTGGCATTGGCTACAAATGCATCTTATCATAAGGATCTCTTGTCCACTGTGAAATCATGGCCATCTGTAATTTATTCTGCGTTACCTGTAATTTCAGCCATTGAACCTCAGCTCAATACTTCATCCATGACCGATTCGCTCAAGGAGGCATTGGCAGAGTTGTATGTTATTGCTGGGCAATATGATAAAGCATTTTCATTTTATGCTGATCTTATGAAACCAGAACTCTTTGATTTCATTGATAAATATAACCTACAAGATTCAATCCATGAAAAGGTTGTCCAATTGATGATGTTGGATTGCAAGCGTGCAGTTCCTTTATTGATCCAGCATAGGGACTTAATAAGTCCACAAGAAGTTGTGAAGCAACTTCTAAATGCTGATGTTAAGTGTGACTGCAGATACTTTTTACATTTGTATCTCCATTCACTATTTGAAGTAAATCCGCATGCTGGGAAAGACTTTCATGATATACAGGTAGAACTCTATGCAGATTATGATCCAAAGATGCTGCTACCTTTTCTACATAGCAGCCAGCACTATACTCTTGAGAAGGCCTATGAAATTTGCACTAAAAAAGAGCTACTGAAGGAGCAAGTTTTCATCTTAGGAAGGATGGGAAACTCAAAGCAAGCCCTAGCAGTTATTATAAATAAACTGGGGGACATTAAGGAGGCTGTAGAGTTTGTCACTATGCAGAATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCATTGACAAGCCTGAAATGGTGGGCATGCTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGCTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACTTCGCTTAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAACCTTTTAATCAAGTACTACAAGGAGGCACGGCATGGAATTTCTTTAGGTAGTGAAGAAGACGAGCCACGAATCAAAAATAGTGATACTCATGATTCTTCAAAATCCCTTGGTCTGAGAAACATGGAAGTGAAGTCAAAGACCAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCTTTCTCTATACAGAATGTTTCAGTCATTGCTTTCTTTTGTTGTCATGCTTACCACACAACTTGTCTCACGGATTCGTCGTACACTAGTAATAATAGCAAGAAAGAGATTAAGAGCAATTCCCGAGAAACATATGATGATTACAATGATTATATGGATGAGGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAGCCGAATTGGGTGCCCCTCGAATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2874 0.4342 MAPIPSENGVDGDDEREEEEEEEVEEDEEEEEEEEDEEEPRLKYQRMGGSIPTMLATDAASCIAVAERMIALGTQGGTVHILDFLGNQVKEFAAHASVVNDLSFDIEGEFIGSCSDDGSVVINSLFTDEKMKFEYQRPMKAIALDPEYARNASRRFVAGGLAGHLYLNSKKWLGYRDQVLHTGEGPIHAVTWRTSLVAWANDAGVKVYDTANDQRITFIERPRGSPRPELLRPHLVWQDDTLLVIGWGTSVKIVSLRTNNHKAANGTYRQVPLSGMVQVDIMASFQTGYFISGIAPFGDVLVVLAYIPGEEDENKDFSSTAPSRQGNAQRPEVRIVSWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNASYHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIAGQYDKAFSFYADLMKPELFDFIDKYNLQDSIHEKVVQLMMLDCKRAVPLLIQHRDLISPQEVVKQLLNADVKCDCRYFLHLYLHSLFEVNPHAGKDFHDIQVELYADYDPKMLLPFLHSSQHYTLEKAYEICTKKELLKEQVFILGRMGNSKQALAVIINKLGDIKEAVEFVTMQNDDELWEELIKQCIDKPEMVGMLLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGSEEDEPRIKNSDTHDSSKSLGLRNMEVKSKTRGGGRCCICFDPFSIQNVSVIAFFCCHAYHTTCLTDSSYTSNNSKKEIKSNSRETYDDYNDYMDEEEEEEEEEDEEAELGAPRMRCILCTTAAS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g00090 957 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 611 758 IPR000547 GO:0006886|GO:0016192
Arst3g00090 957 PIRSF Vps41 900 949 IPR016902 GO:0034058|GO:0046907
Arst3g00090 957 PIRSF Vps41 1 910 IPR016902 GO:0034058|GO:0046907
Arst3g00090 957 PIRSF Vps41 900 949 IPR016902 GO:0034058|GO:0046907
Arst3g00090 957 PIRSF Vps41 1 910 IPR016902 GO:0034058|GO:0046907
Arst3g00090 957 PANTHER VACUOLAR PROTEIN SORTING VPS41 15 924 IPR045111 GO:0006623
Arst3g00090 957 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 283 - -
Arst3g00090 957 MobiDBLite consensus disorder prediction 901 942 - -
Arst3g00090 957 SUPERFAMILY RING/U-box 868 906 - -
Arst3g00090 957 SMART CLH_2 611 758 IPR000547 GO:0006886|GO:0016192
Arst3g00090 957 MobiDBLite consensus disorder prediction 11 38 - -
Arst3g00090 957 Gene3D Tetratricopeptide repeat domain 643 818 IPR011990 GO:0005515
Arst3g00090 957 SMART ring_2 869 952 IPR001841 -
Arst3g00090 957 Gene3D - 9 279 IPR015943 GO:0005515
Arst3g00090 957 CDD RING-H2_Vps8 867 901 - -
Arst3g00090 957 Coils Coil 10 39 - -
Arst3g00090 957 MobiDBLite consensus disorder prediction 1 45 - -
Arst3g00090 957 Coils Coil 912 939 - -
Arst3g00090 957 Pfam Region in Clathrin and VPS 612 754 IPR000547 GO:0006886|GO:0016192
Arst3g00090 957 SMART WD40_4 173 209 IPR001680 GO:0005515
Arst3g00090 957 SMART WD40_4 85 124 IPR001680 GO:0005515
Arst3g00090 957 FunFam Vacuolar protein sorting-associated protein 41 homolog 552 817 - -
Arst3g00090 957 MobiDBLite consensus disorder prediction 922 940 - -
Arst3g00090 957 SUPERFAMILY WD40 repeat-like 57 261 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g00090 Arst-Chr3 647901 655583 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g00090 K20184 - gmx:100804340 1662.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g00090 3 647901 655583 Arst3g00090 3 647901 655583 ECH