Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst2g00091 ATGTTCTTCAAATCCCATTTCAAAAAACAGTTCCGTTTCCCTCCAACACTTTTCTCATTTGTAACTCAATGCTTCAGTAACTACTCTCATGAACCACATCCATGTAATCATTCCCTTAGCAGACTCAAAGCTTTTGTTCCAATCCCTAATGAACCCAACTTTAGGGAGCCTGAAATTGTTCATTTGTTTTGTGCTAAAGCCCTCAAAGTTGCTGCTATAAGGGCTTTTCTCCCTGAAGGGAAACAGTTGCATGCCCATTTGATAAAGTTTGGTTTTTGTCATGTTCTGTCATTGCAAAATCAGTTCTTGAGTATTTACCTTAAATGCAAGGAAACCAAAGATGCACTTAAACTGTTTGATGAATTGCCTGGGAGAAATGTGGTCTCGTGGAATATCCTGATCCGTGGCTTTGTTGGATGTGGAAATGAAAATGACTTATTTCCTCATCTGGGGTTTTCTTATTTCAAGCGGATGTTGTTCGAAAAGGTGGCTCCGGATGATATAACATTGAATGCTTTGATTGGTGTATGTGCAAAGCTTCATGATATCAAAATTGGAGTACAACTGCACTGTTTTGCAATGAAAAGAGGACTTGATTTGGATTGTTTTGTAGGTAGTGCTTTGGTTGATTTTTATGCAAAATTTGGTTTGGTTGAGAATTCAAGGAAGGTTTTTTGTGCTGTTACACATAGAGATTTGGTTATGTTGAATGTCATGATTTCTTGTTATGCCCTGAATTGTTTACCAGAAGAGGCCTTCAGGATTTTCAACTCAATGAGATCGGATGGTGCTAATGGCGACGAATTCACTTTTAGCAGCCTGCTAAGTATATGTGATATTTTAGAATATTATGATTTTGGAAAGCAAGCTCATAGTCTTATTCTGAAACTGTCATTTGAATCCGATATTCTAGTGGCGAGTGCATTAATCAATATGTACGCAAAAAATGAAGATGTCATTGATGCAAAGAGAGTATTTGACAAGATGGCGATTCGAAATGTTGTGGCATCGAATACCATGATTGTTGGGTGTGGAAATAATGGCAAAGTGATTGATGTTATGAAGATTCTCAGAGATATGTTACTCGAAGGAATTTTCCCCGATGAACTCACTATTTCCAGCGTTCTTAGCTCGTGTGGCTATGCTTCTGCCATAACTGAAACTCAGCAAGCTCATGCCTTAGCAGTTAAGCTGTCATTTCAAGAATTTGTATCTGTTTCCAATTCTTTGATTACTGCATACTCCAAGTGTGGTAACATAACTAATGCATTCAAATGCTTCAGATTGATGTTAGAACCTGATCTTGTTACATATACTTCACTGATAAATGCATATGCATTCCATGGTCTTGGCAAAGAAGCAACTGGGATGTTTGAGAAGATGCTATCGTGCGGCATAAAACCTGACCGGATTTCTTTTCTTGGCATTCTCTCTGCTTGTGTGCATTGCGGATTGGTGAACGCAGGACTGCACTACTTCAAATTAATGACAGATGTGTATCATATTATTCCTGATTCAGATCACTATACTTGCCTTATTGATCTCCTTGGAAGACATGGTTTCATAAACGAAGCCTTTGAATTCTTGAAATCAATTCCAATTGAAGCTGAATCGAACATGTTAGGAGCATTCATTGGGTCTAGTAAACTGCATGAAAATATAGAACTGGCTATATCGGCAGCAGGAAAGCTTTTTGCCATAGAGCCAGAGAAGATTGTGAACTATGCTGTCATGGCTAACATTTATGCTTCTCATAATCACTGGCTTGATGCTGAAAGAGTTCGAAAAACCATGAGGGACAAGAATGTTGCTAAATTCCCAGGTTGTAGCTGGATACAGGTTGGTAATCAAGTTCATTCATTTGTGTCTAGTGATAAGGCACACCCCAAAGTTTTGCAGATTTATGCTACTGTAAAAATGTTGCTTAGTCCATTGAAAGAAGAAAATGGTTTGAATTTGTAA 1962 0.3807 MFFKSHFKKQFRFPPTLFSFVTQCFSNYSHEPHPCNHSLSRLKAFVPIPNEPNFREPEIVHLFCAKALKVAAIRAFLPEGKQLHAHLIKFGFCHVLSLQNQFLSIYLKCKETKDALKLFDELPGRNVVSWNILIRGFVGCGNENDLFPHLGFSYFKRMLFEKVAPDDITLNALIGVCAKLHDIKIGVQLHCFAMKRGLDLDCFVGSALVDFYAKFGLVENSRKVFCAVTHRDLVMLNVMISCYALNCLPEEAFRIFNSMRSDGANGDEFTFSSLLSICDILEYYDFGKQAHSLILKLSFESDILVASALINMYAKNEDVIDAKRVFDKMAIRNVVASNTMIVGCGNNGKVIDVMKILRDMLLEGIFPDELTISSVLSSCGYASAITETQQAHALAVKLSFQEFVSVSNSLITAYSKCGNITNAFKCFRLMLEPDLVTYTSLINAYAFHGLGKEATGMFEKMLSCGIKPDRISFLGILSACVHCGLVNAGLHYFKLMTDVYHIIPDSDHYTCLIDLLGRHGFINEAFEFLKSIPIEAESNMLGAFIGSSKLHENIELAISAAGKLFAIEPEKIVNYAVMANIYASHNHWLDAERVRKTMRDKNVAKFPGCSWIQVGNQVHSFVSSDKAHPKVLQIYATVKMLLSPLKEENGLNL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst2g00091 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Arst2g00091 653 Pfam PPR repeat 307 330 IPR002885 -
Arst2g00091 653 Pfam PPR repeat 102 126 IPR002885 -
Arst2g00091 653 Pfam PPR repeat 408 432 IPR002885 -
Arst2g00091 653 Pfam PPR repeat 508 531 IPR002885 -
Arst2g00091 653 Gene3D Tetratricopeptide repeat domain 404 630 IPR011990 GO:0005515
Arst2g00091 653 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 286 387 - -
Arst2g00091 653 Pfam E motif 551 613 IPR046848 -
Arst2g00091 653 Pfam PPR repeat family 332 379 IPR002885 -
Arst2g00091 653 Pfam PPR repeat family 433 481 IPR002885 -
Arst2g00091 653 Pfam PPR repeat family 232 276 IPR002885 -
Arst2g00091 653 Gene3D Tetratricopeptide repeat domain 286 397 IPR011990 GO:0005515
Arst2g00091 653 Gene3D Tetratricopeptide repeat domain 186 285 IPR011990 GO:0005515
Arst2g00091 653 NCBIfam pentatricopeptide repeat 436 469 IPR002885 -
Arst2g00091 653 NCBIfam pentatricopeptide repeat 235 263 IPR002885 -
Arst2g00091 653 NCBIfam pentatricopeptide repeat 338 369 IPR002885 -
Arst2g00091 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Arst2g00091 653 FunFam Pentatricopeptide repeat-containing protein mitochondrial 57 181 - -
Arst2g00091 653 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 647 IPR046960 GO:0003723|GO:0009451
Arst2g00091 653 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 405 631 - -
Arst2g00091 653 FunFam Pentatricopeptide repeat-containing protein At3g58590 185 285 - -
Arst2g00091 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Arst2g00091 653 Gene3D Tetratricopeptide repeat domain 52 185 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst2g00091 Arst-Chr2 673124 675237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst2g00091 18 647 Glycoside Hydrolase AT3G49170 30.805 8.90e-105 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst2g00091 - - gmx:100778378 931.013