Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03317 ATGGCGACAGGACAATTATTCTCCCGTAACACACAGGCTTTATTCTACAACTACAAGCAACTACCCATCCAGCGGATGCTTGATTTTGACTTTCTTTGTGGCAGGGAAACACCATCAGTTGCTGGAATAATTAATCCTGGTTCTGAGGGATTTCAGAAGCTCTTTTTTGGTCAACAGGAAATCGCCATCCCAGTTCATTCTACCATTGAAGCAGCTTGTGCTGCGCATCCTACTGCTGATGTGTTCATCAATTTTGCATCATTTAGAAGTGCCGCAGCATCATCCTTGTCTGCTCTGAAGCAGCCAACAATCAGAGTTGTTGCTATTATTGCCGAAGGTGTACCTGAGTTAGACACTAAGCAATTAATTGCATATGCCCGGGCAAACAACAAGGTTGTTATTGGCCCAGCCACTGTTGGAGGCATTCAAGCCGGTGCTTTTAAGATAGGTGACACAGCTGGAACAATCGACAATATAATTCATTGCAAGCTCTACAGGCCTGGATCTGTCGGATTTGTTTCTAAATCTGGTGGTATGTCCAATGAATTGTACAACTCTATTGCTCGTGTAACTGATGGAATTTATGAAGGCATTGCTATCGGAGGAGATGTTTTTCCGGGTTCCACACTTTCGGATCATGTTTTGCGATTTAACAACATTCCCCAGGTCAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCTCTTGTGGAAGCCCTAAAAGAAGGGAAAGTAACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCAAGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCCAAAAGTGGTGGTGAAATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAGGAAGCTGGAGCTGTTGTTCCCACGTCATATGAATCTTTTGAAGATGCAATAAAGGAAACATATGACAAGTTGGTTAAAGAAGGGAATATCACAGAAGTGAAGGAGTTCACCCCTCCACCTATCCCTGAGGACCTTAGCATTGCAATTAGGAATGGAAAAGTCCGTGCTCCAACTCATATCGTTTCCACCATCTCTGATGACAGAGGTGAGGAGCCGTGCTATGCTGGTGTACCCATGTCTTCCATTATCGAACAGGGTTTTGGTGTGGGTGATGTTATCTGTCTTTTGTGGTTCAAACGCAGCCTTCCCCGCTATTGCACTCAATTTATTGAGATATGCATAATTCTATGTGCCGACCATGGTCCTTGTGTTTCTGGTGCTCACAATGCCATAGTGACAGCAAGGGCTGGGAAGGACCTTGTCTCTTGTCTTGTATCAGGGTTGCTTACAATCGGTCCACGATTTGGGGGTGCTGTTGATGATGCTGCTCGCTACTTCAAGGATGCTTGTGACAGGAGTCTTACACCTTATGAGTTTGTAGAAAGTATGAAGAAGAAAGGCATTCGTGTGCCAGGAATAGGGCACAGAATCAAGAGCAGGGATAACAAAGATAAGAGAGTCGAATTGCTACAGAAGTTTGCTCGCACGCATTTTCCTTCTGTGAAATACATTGAATATGCTGTCCAAGTTGAAGACTACACCCTCACCAAGGCAAATAACTTGGTTCTAAACGTGGATGGTGCAATTGGGTCCCTTTTCTTGGACCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGATATCGGCTATCTGAATGGGCTTTTTGTTCTGGCACGCTCCATTGGTCTGATTGGGCATACGTTTGACCAAAAGAGATTGAAGCAGCCGCTCTACCGCCACCCATGGGAGGATGTTCTTTACACAAAGTGA 1827 0.4461 MATGQLFSRNTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQQEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSLSALKQPTIRVVAIIAEGVPELDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKEGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSYESFEDAIKETYDKLVKEGNITEVKEFTPPPIPEDLSIAIRNGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEQGFGVGDVICLLWFKRSLPRYCTQFIEICIILCADHGPCVSGAHNAIVTARAGKDLVSCLVSGLLTIGPRFGGAVDDAARYFKDACDRSLTPYEFVESMKKKGIRVPGIGHRIKSRDNKDKRVELLQKFARTHFPSVKYIEYAVQVEDYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVDIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03317 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
Arst1g03317 608 FunFam ATP-citrate synthase beta chain protein 2 137 - -
Arst1g03317 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Arst1g03317 608 Gene3D - 451 552 IPR016143 -
Arst1g03317 608 PANTHER ATP-CITRATE SYNTHASE 5 607 IPR002020 GO:0006099|GO:0046912
Arst1g03317 608 PANTHER ATP-CITRATE SYNTHASE 5 607 IPR002020 GO:0006099|GO:0046912
Arst1g03317 608 FunFam ATP-citrate synthase subunit 138 323 - -
Arst1g03317 608 Gene3D - 138 323 IPR016102 -
Arst1g03317 608 PRINTS Succinyl-CoA synthase signature 230 243 - -
Arst1g03317 608 PRINTS Succinyl-CoA synthase signature 199 217 - -
Arst1g03317 608 PRINTS Succinyl-CoA synthase signature 96 113 - -
Arst1g03317 608 PRINTS Succinyl-CoA synthase signature 266 283 - -
Arst1g03317 608 Gene3D - 2 137 - -
Arst1g03317 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Arst1g03317 608 Pfam CoA-ligase 174 298 IPR005811 GO:0003824
Arst1g03317 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 136 IPR036291 -
Arst1g03317 608 FunFam ATP-citrate synthase subunit 1 455 548 - -
Arst1g03317 608 CDD CCL_ACL-C 369 606 - -
Arst1g03317 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0006099|GO:0046912
Arst1g03317 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Arst1g03317 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03317 Arst-Chr1 94370533 94375705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03317 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 91.118 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03317 K01648 - gmx:100801407 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03317 1 94370533 94375705 Arst1g03317 1 94370533 94375705 ECH
Arst1g03317 1 94370533 94375705 Arst4g01250 4 12485861 12492054 PCT