Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g01929 ATGCATAAGAGTCCCTCAGGTTCCACACTGGGCCCAGGTGGGCTCGACCTAACCCAGGCCTTCTTCAGGCCCATAACAAACGCCGCACCACCCTCGCCAACCAAGCGCCAAACCAAGATCTCCGTCATCGGCGTCGGCAACGTCGGCATGGCCATTGCTCAGACCATCCTCACTCAAGATCTCACCGACGAGCTCGTCCTCATCGACAACAAGGACGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACAAAGATCTACGCCTCCGTGGACTACGCCGTCACCGCCGGCTCCGACCTCTGCATAATCACCGCAGGCGCACGCCAGAACGCTGGCGAGTCAAGGCTGAACCTGCTCCAGAGGAACCTCGCGCTGTTCAAGAGCATTGTGCCGCCGCTTGCGCGGTACTCACCGCAGACGGTGCTGCTCATCGTTTCGAACCCCGTGGACGTTCTGACCTACTTGGCGTGGAAGCTCTCCGGTTTTCCATCGAATCGGGTTATCGGGTCGGGTACGAACTTGGACTCCTCAAGGTTCAGGTTCCTCATCGCCGATCATCTCGACGTCAACGCTCAGGACGTGCAGGCTTACATAGTGGGGGAACATGGGGATAGCTCGGTGGCTCTGTGGTCTAGCATCAGCATTGGTGGTGTTCCGGTTCTGAGCTTTTTGGAGAAACAGCAGATAGCATACGAGAAGGAAACATTAGAGAACATACACAAAGCAGTGATAGACAGCGCCTATGAAGTTATCAGCCTCAAAGGCTACACTTCTTGGGCCATTGGCTACTCTGTTGCTAGCTTGGCGCGCTCTATTCTCCGGGACCAAAGGAAGATCCACCCTGTTTCTGTTTTGGCAAAAGGCTTCTACGGCATTGGCAACGAAGTGTTCCTCAGCTTGCCAGCACAGCTTGGTCGCGGAGGAGTGTTGGGTGTGACCAATGTGCACTTGAATGAAGAGGAGTTACAAAGGCTCAGGGACTCTGCCAAGACCATACTTGAGGTGCAGACTCAGTTAGATCTTTGA 1050 0.561 MHKSPSGSTLGPGGLDLTQAFFRPITNAAPPSPTKRQTKISVIGVGNVGMAIAQTILTQDLTDELVLIDNKDDKLRGEMLDLQHAAAFLPRTKIYASVDYAVTAGSDLCIITAGARQNAGESRLNLLQRNLALFKSIVPPLARYSPQTVLLIVSNPVDVLTYLAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLEKQQIAYEKETLENIHKAVIDSAYEVISLKGYTSWAIGYSVASLARSILRDQRKIHPVSVLAKGFYGIGNEVFLSLPAQLGRGGVLGVTNVHLNEEELQRLRDSAKTILEVQTQLDL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g01929 349 PIRSF Lac_mal_DH 34 348 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 Hamap L-lactate dehydrogenase [ldh]. 37 348 IPR011304 GO:0004459|GO:0005737
Arst1g01929 349 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Arst1g01929 349 CDD LDH_1 35 346 - -
Arst1g01929 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 342 IPR022383 GO:0016616
Arst1g01929 349 SUPERFAMILY LDH C-terminal domain-like 178 346 IPR015955 GO:0003824|GO:0016616
Arst1g01929 349 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Arst1g01929 349 Gene3D - 180 347 IPR015955 GO:0003824|GO:0016616
Arst1g01929 349 NCBIfam L-lactate dehydrogenase 42 340 IPR011304 GO:0004459|GO:0005737
Arst1g01929 349 Gene3D - 34 179 - -
Arst1g01929 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Arst1g01929 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 18 348 - -
Arst1g01929 349 FunFam Malate dehydrogenase 34 179 - -
Arst1g01929 349 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g01929 Arst-Chr1 38043917 38046022 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g01929 K00016 - zju:107418882 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g01929 1 38043917 38046022 Arst1g01929 1 38043917 38046022 ECH
Arst5g01254 5 13391593 13392665 Arst1g01929 1 38043917 38046022 PCT