Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00406 ATGCAGCCTCTCCGGCCGGCGAATCTTGCGCCCCTAGCGGCAGCGCTACTCCTCTTAGCCGCCGCCACAACCCATGCACACAACATTACCCGCATTTTGGAGAAGCACCCCGACTTCTCCACCTTCAACAAGTACCTAACACTAACTCACCTTGCGCCGGAGATCAACCGGCGAATCACCATAACCGTGTGCGCCATCGACAACAGCGCCATGAACGAGCTGCTGTCGAAGCACCCTTCCATCTACACTCTGAAGAACATCCTGTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTTTCAGGCCACCGGAACCGCCCCCGGCTCCACGGGATTCGTCAACATCACCGACCTCCGCGGCGGAAAGGTGGGCTTCGGCGCCGAGAATAACGGCGGCGCCCTGTCCGCATTCTTCGTGAAATCGTTGGAGGAAATCCCTTACAACATATCCATAATACAGATCAGCAAGCCACTCCCCTCGGCTGCAGCAGAAGCCCCTACACCCGCACCCAGCAAGCAAAATCTCACTTCGATAATGTCCCGCCATGGCTGCAAGGTCTTTGCCGACACCCTCTCTGCCTCCCCCGACGCTATGTCCACCTTTTCTGACAATGTGGATGGCGGACTCACCGTCTTCTGCCCCATGGATGACGCCTTTAAGGCATTCCTACCCAAGTATAAGAACCTAACTGCAGCTGGGAAGGCGTCGTTGCTGGAGTACCATGCTACGCCTGTTTATGAGAGCATGGCTATGTTGAAGTCAAACAATGGTTTGATGAACACGCTTGCAACCGATGGAGCCAGCAAGTTCGACTTCACCGTGCAGAATGACGGTGATCAAGTCACGCTCAAGACCAAGATTGTTACTGCCAAGATCACTGGCACGCTCATTGACGAGGACCCGCTCGCGATCTACACCATTGATAAGGTTCTGCTTCCCAGGGAGCTTTTCAAGGCCCTGGCTCCGTCTCCTTCGCCCTCGCCCGCACCGGAGCCAGCCGCCGCCGACGCTCCTGCATCCCCGAAGAAAGGGGGAAAGAAGAAGAAGCAGAAGGCAGCCGACGCGCCGGCAGATGAGGAATCAGCGCCTGCGGATTCGCCCAGTGATGCCGCCGATGAGAGCGCTGACGACGGTAACGGCGCTGTTAGGTTTGACGGCGTCAGGTACGGTAACGTCATCTTCGTGGTTATGGCTTTGTGCTTTGGATTTTCGTTGCTGTAA 1269 0.5713 MQPLRPANLAPLAAALLLLAAATTHAHNITRILEKHPDFSTFNKYLTLTHLAPEINRRITITVCAIDNSAMNELLSKHPSIYTLKNILSLHVLLDYFGAKKLHQITNGTALAATMFQATGTAPGSTGFVNITDLRGGKVGFGAENNGGALSAFFVKSLEEIPYNISIIQISKPLPSAAAEAPTPAPSKQNLTSIMSRHGCKVFADTLSASPDAMSTFSDNVDGGLTVFCPMDDAFKAFLPKYKNLTAAGKASLLEYHATPVYESMAMLKSNNGLMNTLATDGASKFDFTVQNDGDQVTLKTKIVTAKITGTLIDEDPLAIYTIDKVLLPRELFKALAPSPSPSPAPEPAAADAPASPKKGGKKKKQKAADAPADEESAPADSPSDAADESADDGNGAVRFDGVRYGNVIFVVMALCFGFSLL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00406 422 Gene3D FAS1 domain 25 157 IPR036378 -
Arst1g00406 422 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Arst1g00406 422 SUPERFAMILY FAS1 domain 184 330 IPR036378 -
Arst1g00406 422 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Arst1g00406 422 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
Arst1g00406 422 Pfam Fasciclin domain 37 107 IPR000782 -
Arst1g00406 422 Pfam Fasciclin domain 200 329 IPR000782 -
Arst1g00406 422 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 392 IPR033254 -
Arst1g00406 422 MobiDBLite consensus disorder prediction 337 396 - -
Arst1g00406 422 SMART fasc_3 62 177 IPR000782 -
Arst1g00406 422 SMART fasc_3 226 330 IPR000782 -
Arst1g00406 422 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
Arst1g00406 422 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Arst1g00406 422 Gene3D FAS1 domain 168 330 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00406 Arst-Chr1 3665651 3667470 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00406 - - lang:109350304 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00406 1 3665651 3667470 Arst1g00406 1 3665651 3667470 ECH