Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00363 ATGGTGAAAATGCTACAAGGAATGGATATATCAGAGTACACGAGAATTGTTTTCGACAAGCTTCAAAAATTCGAACCAGAGCATGCCACAAAGATAATTGGATACCTCCTTGTTCAAGAACATGGCGAGGAACAGATGATTAAATTGGCTTCATACCCAGACCACCTGATCCGTGAAGTCGCTTTCAAAGCCAAAACCGAATTCCAAAGACTAACCACACTTCCAGATCTAAGGCACTTAATCACCCTCCAACTTTCCTCTCCTTCTTGGGATCATCACTCTTTCTCGGAGCTTCAGAAGCAGTTCGAGATCTTCGAAACAAGAATGGCAAATGATTACTACATTGCAGATTCCTTGCCTTGCAAGTTAAGAGGCGGAAGGAGGTTTTCGAACGAGTTTCCGGTGAAAACCTGTCACTATTTCAACAAAGGATATTGCAAGCATGGAGCCAGCTGTCGCTATTATCACGGACAGGCTGGCCACGAGATGTACGGAAGCTACGACTATTCTTCTTCTTCTTCGGTTCAGGGGGATCAAGTGATTTCGGCAGGGTCTTTGGCGAATTTGGAGTCGGAAATCGTGGAGCTGTTGAAATCAAGAAAAGGAAGCCCGATATCGATTGCTTCGCTTCCAATGGCGTACTATGAGAAGTATAACAAGGTACTGCAGGCTGAAGGTTATCTTACTGAGAGCCAGAGACATGGTAAGTCTGGTTATAGTTTGACCAAGCTTCTTGCAAGATGGAAGAATTGCATTCGCGTATTTGACAGGCCTCATGGGCAGCACGCAGTGGTTTTGGCAGAAGATGCTCCAAAATACATAGGAAAGGGAGAGTTTGGTCAAAATATTAGTGCGTCAAGACAAATATATTTGACATTTCCAGCTGATAGCACTTTCACAGAGGAAGATGTTTCAAACTACTTCAACACCTTTGGGAGTGTTGAAGATGTAAGGATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACCTTTGTTGAACCAGAAACTGTTAAAATGATTTTGGAAAAGGGAAATCCCCATTATGTTCGTGGCTCTAGGGTGCTTGTAAAACCTTACAAGGAGAAGCCAAAAGTTGATAGGAAGTACGTAGAGAGGATTGAGCACCCTGATTGTTATTCGTCTCGCTATGTAGGTCTGGATGCAGAGCTTACAATTCCAAGAAGATGCGGTAACCCTCAAGGCCTGAGGAGATTCCTCATTGAAGAGCAGGAGCATGCTCTTGAATTCCAAAGAAGACGAGTTGCAGAGTTACAGCTAGGCCGAAAATGGATGTCGAATTCACCCCATTTTGGCTTTGACATGGAGGAGCTAAAGGTTCCTGATGATCATTTCAATCATCAGTCCACTGGATCCTCCAGTAGTTATGCTTCAACTGACAAATCTGGATATACAAAAACAGAACCTAACTATACTGATCAGGACAGCTGTGAAGGATTGAATCTCCCAGAAAGTCCATTTGCATTTCCGGTAGATAATGAAATTTCAGCCATGGTATAA 1521 0.4326 MVKMLQGMDISEYTRIVFDKLQKFEPEHATKIIGYLLVQEHGEEQMIKLASYPDHLIREVAFKAKTEFQRLTTLPDLRHLITLQLSSPSWDHHSFSELQKQFEIFETRMANDYYIADSLPCKLRGGRRFSNEFPVKTCHYFNKGYCKHGASCRYYHGQAGHEMYGSYDYSSSSSVQGDQVISAGSLANLESEIVELLKSRKGSPISIASLPMAYYEKYNKVLQAEGYLTESQRHGKSGYSLTKLLARWKNCIRVFDRPHGQHAVVLAEDAPKYIGKGEFGQNISASRQIYLTFPADSTFTEEDVSNYFNTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILEKGNPHYVRGSRVLVKPYKEKPKVDRKYVERIEHPDCYSSRYVGLDAELTIPRRCGNPQGLRRFLIEEQEHALEFQRRRVAELQLGRKWMSNSPHFGFDMEELKVPDDHFNHQSTGSSSSYASTDKSGYTKTEPNYTDQDSCEGLNLPESPFAFPVDNEISAMV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00363 506 SUPERFAMILY CCCH zinc finger 134 157 IPR036855 GO:0046872
Arst1g00363 506 MobiDBLite consensus disorder prediction 452 486 - -
Arst1g00363 506 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Arst1g00363 506 SUPERFAMILY RNA-binding domain, RBD 297 368 IPR035979 GO:0003676
Arst1g00363 506 CDD RRM_AtC3H46_like 289 358 IPR034365 -
Arst1g00363 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 354 IPR000504 GO:0003723
Arst1g00363 506 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 8 498 - -
Arst1g00363 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 158 IPR000571 GO:0046872
Arst1g00363 506 Pfam OST-HTH/LOTUS domain 185 263 IPR025605 -
Arst1g00363 506 SMART rrm1_1 288 358 IPR000504 GO:0003723
Arst1g00363 506 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 294 365 - -
Arst1g00363 506 Gene3D - 129 181 - -
Arst1g00363 506 Gene3D - 289 367 IPR012677 -
Arst1g00363 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 362 IPR000504 GO:0003723
Arst1g00363 506 Coils Coil 408 428 - -
Arst1g00363 506 MobiDBLite consensus disorder prediction 449 492 - -
Arst1g00363 506 ProSiteProfiles OST-type HTH domain profile. 185 269 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00363 Arst-Chr1 3354883 3359585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00363 - - aip:107645763 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00363 1 3354883 3359585 Arst1g00363 1 3354883 3359585 ECH
Arst1g00363 1 3354883 3359585 Arst7g00330 7 2208767 2213627 PCT