Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00309 ATGAGCACGGTCCCAAAAGAAACGATCGAAGTGATAGCACAGAGCATTGGCATCACGAATCTGTCCCCTGATGTTGCCTTCGCTCTCGCCCCCGATCTCGAGTATCGAATTCGCGAAATCATGCAGGAGTCCATAAAATGCATGCGTCACTCAAAGAGAACTATTCTTACAGCAGATGATGTTGATAGTGCACTTGCATTGAGAAATTTAGAGCCAATATATGGTTTCACCTCTAACGACCCTCTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGATGTGGAATTTAAAGATCTGATTGAAGCACCATTACCAAAAGCTCCGCTTGATACATCAATTACCAGTCATTGGCTGGCTATTGAAGGTGTACAACCTGCGATTCCTGAGAATGCTCCAGTTGAAGCTCCCACAGAAATAAGAAAATCGTCTGAGTATAAGGAAGATGGGATTCCAGTTGACATTAAATTACCTGTTAAACACGTAATAACAAAGGAGCTTCAGCTTTACTTTGACAAAATAACTGAGCTAGTTCTAAATAAGCCTGCTTCTATTCCCTTTAGAAGGGCACTAATTAGCTTGGCAACAGACATGGGACTCCATCCTTTGGTTCCTTATTTCTCACGCTTTGTAGCTGATGAGGTGGCACAAAACTTGCATAATTTAACACTTTTATTTGCCTTGATGCGTCTTGTCCGGAGCATTCTACAAAATCCTCACATACATATAGAGCTTTATTTACATCAATTGATGCCACCTATCATTACCTGTGTTGTTGCAAAAAGGATTGGAAACAGACTATCTGATAATCACTGGGAGCTTAGGAACTTCAGTGTTAATCTTGTTGCTTCAATATGCAAAAGATTTGGGAATGTTTATCATAATCTTCAGCCACGAGTGACAAAGACTTTTCTTCATGCATTTTTGGACCCAACTAAAGCTCTACCTCAGCACTATGGTGCAATTAAAGGAATAGCAGCTCTTGGATCAAGACTGGTTCGCTTGTTTATACTTCCAAACCTTGAGCCATATTTGCTTCTCCTCGAGCCGGAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGGCAAGTATATGGGGCCTTGTTGTGTGCTGTTGGACAATGTATGCATGAAAGGGCCAAAATATTCAGCAATTTGCTCTCTCCTCCAACACGTGCTTCTTCTAGACCCAATGGAAAAGCCATGATTGCTATGTCAAGCAAACGTAAAGCCAGCACAGAAAACCTAATGCAGCAGCAGCAACCTCCATTGAAGAAACTTGCCACGGATGGCCCCGGGGGTGTGGTACCAATGAACTCCATGTCTGTTGACATGCAAATGCAAGGGTCAGCAGGTGCATTTTCGACCATGATGGGGGTTCCAAATGTTGGCGTGTCATCAATGGCTCGGCAGATATCTAATGACAACACAATGGGGAGAGAGGTTGGCGGTCAACAATCGAAGGTATCTTCCATTCTCGCTCAAGCCTGGAAGGATGACATCGATGCAGGACAATTACTGTCATCAGTGTATGAATTATTTGGTGAAAGTTTGTTATCCTTTATTCCAAAAGCTGAAGCAGGTGTATTTTTGTAA 1629 0.4254 MSTVPKETIEVIAQSIGITNLSPDVAFALAPDLEYRIREIMQESIKCMRHSKRTILTADDVDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVEFKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPTEIRKSSEYKEDGIPVDIKLPVKHVITKELQLYFDKITELVLNKPASIPFRRALISLATDMGLHPLVPYFSRFVADEVAQNLHNLTLLFALMRLVRSILQNPHIHIELYLHQLMPPIITCVVAKRIGNRLSDNHWELRNFSVNLVASICKRFGNVYHNLQPRVTKTFLHAFLDPTKALPQHYGAIKGIAALGSRLVRLFILPNLEPYLLLLEPEMQPEKQRNETKRQEAWQVYGALLCAVGQCMHERAKIFSNLLSPPTRASSRPNGKAMIAMSSKRKASTENLMQQQQPPLKKLATDGPGGVVPMNSMSVDMQMQGSAGAFSTMMGVPNVGVSSMARQISNDNTMGREVGGQQSKVSSILAQAWKDDIDAGQLLSSVYELFGESLLSFIPKAEAGVFL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00309 542 Gene3D - 165 370 IPR046344 GO:0006367
Arst1g00309 542 SMART TAF_cls 2 68 IPR004823 -
Arst1g00309 542 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Arst1g00309 542 FunFam transcription initiation factor TFIID subunit 6 165 370 - -
Arst1g00309 542 Pfam TAF6 C-terminal HEAT repeat domain 260 347 IPR011442 GO:0006367
Arst1g00309 542 CDD TAF6C 166 382 IPR011442 GO:0006367
Arst1g00309 542 SUPERFAMILY ARM repeat 195 387 IPR016024 -
Arst1g00309 542 SUPERFAMILY Histone-fold 4 76 IPR009072 GO:0046982
Arst1g00309 542 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Arst1g00309 542 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 537 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Arst1g00309 542 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00309 Arst-Chr1 2857883 2863241 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00309 K03131 - gmx:100799998 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00309 1 2857883 2863241 Arst1g00309 1 2857883 2863241 ECH