Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02503 ATGGCTGAGGCAGTAAGAAAAGCCACAACTCACCCATCTTCAAACGTTTCTTCAGTCGTAGCTTCCATTACGTCACTGATTCAAACCATAAACCCCCAAAACCCAAATGCCTGTGAAGCACTGAAACCATTCTCACCTTACCTCACTCAACCATTGGTCATCCAAGTCATCAAGAACTTACGCAGTCCCAACCACGCACTATTCTTCTTCAACTGGGCCTCCAACTCCCAACCCAACCCCAACAACTACTCTCACACGCGCCACTGTTACGCCGCCATAACCGACTCCCTTCTCTCTCACTCTCTCTTCTCCACCGCCCACCACCTCCTCCACCGCTCCAAGAACCTCTCCGACTCCTTGATTTGCAAATTCATCGTTGCTCTCGGCAATCGCGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAGAGCTTTTCACATGGCCGATGCTTGTTATCCTGTAACGCCGTCTTGGGTGTTCTTGTAAGAGCCAATCGGATCAATTTGTCAAAGTCTATCTTTGACCAGGTTGTGGAGGAGGGTGTGTTTGAGCTCGACGTGTTCACTTATACCACCATGATTAGGGGCTTCTGCAAAATAGGCATGGTCCACAGTGCACTCAAGGTGTTCGATGAAATGCGCTGTTCGCCCAATTCGGTTACTTACAACACTTTGATTCACGGGTTTTGCAAGAACGGTGATATGGAGGGTGCCAAGAGGGTTTTTGATAGAATGGTGGAAGTAGGGGGTCAGAGTTGCAAGCCGGATGTGGTGACTTATACTACTTTAATTGATGGATATTCAAAGAAAGGTGAGTTCCGCGAAGCTTTAGAGTGTATGGAAGAGATGGTAAAACAGGGTTGTCATCCAAATGTGTTGACCTACAATGCGTTGATTGAAGGCCTTTGCTTGGGTGGGAATGTGGACGAGGCCATGAAGATGATGACTAGGATGCGATTGAATGGTTTAGAAGGCAATGTTACCACAAACACCAGCATCATGAAGGGTTTTTGCATTGTGGGAAGGTCTGAAGAAGCTATCATGCATCTGAAGGAAATGGATAGTCGCGGGATGAGGCCGGATTTGAAGGCTTACAGTGTCATAGTCAATGAGTATTGCAAAATTAGGAAACCAGATGATGCCCTTTTACTTATAAGGGAGATGGTGGTCAAGGGAATCAAGCCATCTGTGTCAAGTTTTAATGCAGTGTTTAGAGTTCTTGTGGATATAGGGAAGCTGGATGAAGCAGTTCATCTTTTGAAGCAGATGCCTCAAATGGGCTGCATACCCAACTTCTTATCATATAGCATAGTGATCTGTGGTCTTTGTAAAGTGAATGGTAGGATGCAAGAAGTTGAAGGGCTTGTATCTGAGATGCTTGAGAACGGACATGACCTTGATACCACCTTGTACAATTGCTTGCTTGAGGGATATTGTGATCTTGGGGATGAGGAAATGGCATTGAGGACTGTCTATCACATGATTGATAAGAACTTTGTAATCAACAAAGACACATTCTGCATTTTTGTCAAGGAGTTGCGTGGAAAGGGAAAACTTAGCAAGGCAGTGACTGTTGTTGAAGAGATGTGCAGGAGATGCAATGTACCTGATATAAATTCTTACAGAGCGTTACTATCTCAGTCGTTGGAAAGTGATCAAAGATCCTTCAATCAAATATTACTCTAG 1692 0.4521 MAEAVRKATTHPSSNVSSVVASITSLIQTINPQNPNACEALKPFSPYLTQPLVIQVIKNLRSPNHALFFFNWASNSQPNPNNYSHTRHCYAAITDSLLSHSLFSTAHHLLHRSKNLSDSLICKFIVALGNRGDIRGAIHWFHKAKSFSHGRCLLSCNAVLGVLVRANRINLSKSIFDQVVEEGVFELDVFTYTTMIRGFCKIGMVHSALKVFDEMRCSPNSVTYNTLIHGFCKNGDMEGAKRVFDRMVEVGGQSCKPDVVTYTTLIDGYSKKGEFREALECMEEMVKQGCHPNVLTYNALIEGLCLGGNVDEAMKMMTRMRLNGLEGNVTTNTSIMKGFCIVGRSEEAIMHLKEMDSRGMRPDLKAYSVIVNEYCKIRKPDDALLLIREMVVKGIKPSVSSFNAVFRVLVDIGKLDEAVHLLKQMPQMGCIPNFLSYSIVICGLCKVNGRMQEVEGLVSEMLENGHDLDTTLYNCLLEGYCDLGDEEMALRTVYHMIDKNFVINKDTFCIFVKELRGKGKLSKAVTVVEEMCRRCNVPDINSYRALLSQSLESDQRSFNQILL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02503 563 Pfam PPR repeat family 397 446 IPR002885 -
Arst10g02503 563 Pfam PPR repeat family 257 305 IPR002885 -
Arst10g02503 563 Pfam PPR repeat family 328 376 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Arst10g02503 563 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 50 363 - -
Arst10g02503 563 Gene3D Tetratricopeptide repeat domain 221 320 IPR011990 GO:0005515
Arst10g02503 563 Gene3D Tetratricopeptide repeat domain 391 560 IPR011990 GO:0005515
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Arst10g02503 563 Gene3D Tetratricopeptide repeat domain 111 220 IPR011990 GO:0005515
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Arst10g02503 563 Pfam PPR repeat 217 248 IPR002885 -
Arst10g02503 563 Pfam PPR repeat 186 216 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Arst10g02503 563 SUPERFAMILY HCP-like 130 324 - -
Arst10g02503 563 Pfam PPR repeat 472 501 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 472 504 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 366 399 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 222 251 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 260 294 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 296 328 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 401 433 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 333 363 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 436 469 IPR002885 -
Arst10g02503 563 NCBIfam pentatricopeptide repeat 190 218 IPR002885 -
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Arst10g02503 563 Gene3D Tetratricopeptide repeat domain 321 390 IPR011990 GO:0005515
Arst10g02503 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 468 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02503 Arst-Chr10 87693479 87695170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02503 42 562 Glycosyltransferase AT1G05670 23.706 3.25e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02503 - - aprc:113866240 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02503 10 87693479 87695170 Arst10g02503 10 87693479 87695170 ECH