Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02376 ATGTCATATTGCTGTGCCTTCGCTGACACCAATGTCTATCTTCTGAAAAATAATGGGCTCTTGGGTGGAAGCAGTTCTGTGAAAGTAAAGATTTTGACTAATGGGTCTTCGCTAAATCAGAAGAAACTTGGAAGAAGACAAGTGGGTCTTCATGCCTTTGGCACAAAGTGTGCACACGAGGTGGTTGTGGAAAATGGCAAGAGAAAAATGGGAGTGTCCTCTGAAGAAGTTATTGGAGTTCTGAAGTCTATTTCGGATCCAAATTCTGCTCTTTCCTACTTCAAGATGGTTGCTCAGTTGCCGAATATTTTGCATACCACTGAAGCATGCAATTACATGCTTGAGTTGTTGAGGGCTCACACGAGGATTCAGGATATGGTCTTTGTCTTTGATGTAATGCAAAAGCAAGTTATTAATCGAAATTTGAATACGTATCTCACTATATTTAAAGCTCTTTCAGTTAAAGGTGGGATTCGGCGGGCGCCATTTGCACTTGGAAAGATGAGGGAAGCTGGTTTCATCCTGAATGCTTATTCATATAATGGAATGATCCATTTACTACTCCAACCTGGGTTTTGTAGAGAGGCTTTGGAGGTTTATAGAAGAATGATCTCGGAAGGGCTTAAGCCTAGCATGAAGACATACTCAGCACTGATGGTAGCACTAGGGAAGAAAAGGGATACCAGAACCATTATGGATTTGTTGGAAGAGATGAAAACTTTGGAATTGAGGCCAAATATGTACACATATACCATATGCATTAGAGCACTTGGTAGGGTAGGGAAAATTGATGATGCCTGTGCGATTTTAAGGGAAATGGATGATGAAGGATGCGGGCCTGATGTTGTCACTTATACAGTTCTGATTGATGCTCTTTGTAATGCGGGGAAGCTTGATAAGGCCGAGGAATTATATACAAAGATGAGAGAGAGCCATCACAAACCTGATCGGATAACATATACTACTTTGATCGACAAGTTCAGTAACTGTGGCAACTTGGATATGGTGAAAAGATTCTGGAGGGAGATGGAAGCTGATGGTTATGAACCTGACGTGGTTTCCTACACAACATTCATTGATGCTTTATGCAAATCTGGGAGCATTGATCAGGCCTTTGCTATGTTAGAAACGATGAAGATGAAAGGAACTTTTCCAAATCTTCATACTTACAACACTTTGATCTCTGGACTTTTGAAGAGGAAAAGATTAGATGAGGCATTAGAACTTTTCGATAATATGGAATCTTTGGGCGTTGAACCTACTGCTTATTCATATGTTCTGTTCATCGACTATTATGGAAAGTCCGGTGATCCAGGAAAAGCTCTTGAGACCTTTGAAACGATGAAAAATAGAGGAATTGCGCCTAGTATAGTAGCATGTAATGTATCTTTATATAGTCTTGCAGAAATGGGTAGGATCAGAGAAGCAAATGATATATTCAACGATCTTTACAACTGCGGACTTTCACCAGATTCAGTAACCTATAATATGATGATGAAGTGCTATAGCAAAGCAGGGCAAATAGACAAAGCCATAGAGCTTTTGGATGAGATGATAAGCAATAGGTGTGAACCAGATATAATTATGGTTAATTCGTTAATTTATATGCTTTACAAGGCCGATCGAGTTGATGAGGCATGGGAAATGTTTGGGAGACTGAAGGATTTGAAGCTGGCTCCGACGGTAGTGACATACAATACTCTACTTGCTGGCTTGGGGAAAGAAGGAAAAGTCGAAAGGGTTCTTGAACTGTTTGGGAGTATGACAGAGTCTGGATGTCCTCCAAACACAATAACTTTCAACACACTCCTTGATTGTCTTTGCAAGAACGACGCGGTTGATTTGGCGTTGAAAATGCTATGCAGAATGACGATGATGAACTGTAGTCATGATGTTCTGACTTATAACACCATCATCTATGGGTTGATCAAAGAAGACAGAATTAGTTATGCATTCTGGTTTTTCCATCAGATGAAGAAATCTCTCTACCCTGATCTCGTAACTTTATGCACCCTCCTTCCTGGTGTTGTACGGTATGGAATGATAGAGGATGCTCTCAAGATTGTCATTGAATTTGTTTATCAGGCAGGTTTAGAGAAAGGCAAACAATCCTTGGAAGAACTAATGGAATCCATTTTAGTTGAAGCGAAAATTGAAGATGCCATTCTATTTGCTGAAAGATTGGTAAGTGCTTCTGGTTTCCAAGATGACTATGTAATATTACCTCTAATTAAAGCCTTGTGTAAGCGGAACAAGATCCTTGATGCTCAAAAATTATTTGATAAGTTCACCAAAACTTTGGGAGTTCATGCAACCGTTGAATCATATAATTGCTTGATGGATGGGGTTCTTGGATCTAATATGATTGAAAAAGCCTGGGATCTTTTTGTGGAGATGAAGGATGCAGGTTGTCATCCAAATATTTTCACGTATAACTTGCTGCTCGATGCTCATGGTAAATCTGGGAGGATTGATGAACTCCTTGAACTTTTCAATGAGCTGCAGAGTAGGGGATGCAAGCCTAATGCCATAACCCATAACATTATCATCTCTGCGCTTGTGAAATCTAATAGCATCAATAAGGCATTAGATTTGTATTATGAGCTCATAAGTGGTGATTTCTCTCCCACTCCCTGCACTTATGGACCTCTTATAGATGGACTTTTAAAGAGTGGGAGATTTGAGGAAGCAATGAAGATCTTTGAGGAGATGTTAGACTATCAATGCAAGCCAAACAGTGCTATTTTCAATATTCTCATCAATGGATTTGGGAAAGCTGGAAAAATTGATGTTGCTTGTGATATGTTCAAGAGGATGGTTAAAGAGGGAATAAGGCCAGACCTGAAGTCTTACACAATTCTTGTAGAGTGCCTATGCTTGGCCGGAAGAGTCGACGATGCTGTGTACTACTTTGAGGAACTAAAGTCAACTGGCCTTGATCCTGATAGAGTTTCGTACAATCTTATGATCAATGGGCTCGGAAGATCACGCAGGTTGGACAATGCTCTTTCTCTTTTCGGCGAAATGAAGTGTAGGGGAATTTCTCCTGATCTTTACACTTACAATGCATTGATTCTCCATCTTGGGATAATTGGAGAGGTGGACCTAGCCGGAAAGATGTATGAGGAACTGCAAGCAAGGGGTCTGGAACCTAATGTCTTCACTTATAATGCTCTCATTCGTGGGCATAGTTTGTCGGGAAACAAAGACAGAGCTTTCAATGTCTACAAGAAGATGATGGTACAGGGGTGCAGCCCCAACAGACAAACTTTTGCTCAACTTCCTAATAAATGCTGA 3297 0.4034 MSYCCAFADTNVYLLKNNGLLGGSSSVKVKILTNGSSLNQKKLGRRQVGLHAFGTKCAHEVVVENGKRKMGVSSEEVIGVLKSISDPNSALSYFKMVAQLPNILHTTEACNYMLELLRAHTRIQDMVFVFDVMQKQVINRNLNTYLTIFKALSVKGGIRRAPFALGKMREAGFILNAYSYNGMIHLLLQPGFCREALEVYRRMISEGLKPSMKTYSALMVALGKKRDTRTIMDLLEEMKTLELRPNMYTYTICIRALGRVGKIDDACAILREMDDEGCGPDVVTYTVLIDALCNAGKLDKAEELYTKMRESHHKPDRITYTTLIDKFSNCGNLDMVKRFWREMEADGYEPDVVSYTTFIDALCKSGSIDQAFAMLETMKMKGTFPNLHTYNTLISGLLKRKRLDEALELFDNMESLGVEPTAYSYVLFIDYYGKSGDPGKALETFETMKNRGIAPSIVACNVSLYSLAEMGRIREANDIFNDLYNCGLSPDSVTYNMMMKCYSKAGQIDKAIELLDEMISNRCEPDIIMVNSLIYMLYKADRVDEAWEMFGRLKDLKLAPTVVTYNTLLAGLGKEGKVERVLELFGSMTESGCPPNTITFNTLLDCLCKNDAVDLALKMLCRMTMMNCSHDVLTYNTIIYGLIKEDRISYAFWFFHQMKKSLYPDLVTLCTLLPGVVRYGMIEDALKIVIEFVYQAGLEKGKQSLEELMESILVEAKIEDAILFAERLVSASGFQDDYVILPLIKALCKRNKILDAQKLFDKFTKTLGVHATVESYNCLMDGVLGSNMIEKAWDLFVEMKDAGCHPNIFTYNLLLDAHGKSGRIDELLELFNELQSRGCKPNAITHNIIISALVKSNSINKALDLYYELISGDFSPTPCTYGPLIDGLLKSGRFEEAMKIFEEMLDYQCKPNSAIFNILINGFGKAGKIDVACDMFKRMVKEGIRPDLKSYTILVECLCLAGRVDDAVYYFEELKSTGLDPDRVSYNLMINGLGRSRRLDNALSLFGEMKCRGISPDLYTYNALILHLGIIGEVDLAGKMYEELQARGLEPNVFTYNALIRGHSLSGNKDRAFNVYKKMMVQGCSPNRQTFAQLPNKC 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat 844 871 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat 880 908 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat 529 556 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1017 1051 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 912 946 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 51 224 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 857 960 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 726 856 IPR011990 GO:0005515
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 415 484 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 485 554 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 623 696 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 342 414 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 555 622 IPR011990 GO:0005515
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 661 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Arst10g02376 1098 Coils Coil 224 244 - -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Arst10g02376 1098 SUPERFAMILY TPR-like 180 983 IPR011990 GO:0005515
Arst10g02376 1098 Pfam PPR repeat 487 518 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat 346 379 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat 243 273 IPR002885 -
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 225 341 IPR011990 GO:0005515
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 225 341 IPR011990 GO:0005515
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Arst10g02376 1098 Pfam Pentatricopeptide repeat domain 167 224 IPR002885 -
Arst10g02376 1098 Pfam Pentatricopeptide repeat domain 1041 1094 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 807 841 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 772 806 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1052 1086 IPR002885 -
Arst10g02376 1098 Gene3D Tetratricopeptide repeat domain 967 1098 IPR011990 GO:0005515
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 877 911 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Arst10g02376 1098 SUPERFAMILY HCP-like 747 978 - -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Arst10g02376 1098 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 280 508 - -
Arst10g02376 1098 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 280 508 - -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 950 982 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 214 246 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 563 597 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 318 352 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 529 561 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 493 527 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 775 808 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 598 631 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 1019 1053 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 1054 1087 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 248 282 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 844 877 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 984 1017 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 353 386 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 809 843 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 915 947 IPR002885 -
Arst10g02376 1098 NCBIfam pentatricopeptide repeat 879 912 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 560 609 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 773 818 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 631 676 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 911 959 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 981 1025 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 280 327 IPR002885 -
Arst10g02376 1098 Pfam PPR repeat family 385 429 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 842 876 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 982 1016 IPR002885 -
Arst10g02376 1098 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 947 981 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02376 Arst-Chr10 84756082 84760594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02376 180 678 Glycosyltransferase AT1G05670 27.545 8.41e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02376 - - gmx:100778358 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02376 10 84756082 84760594 Arst10g02376 10 84756082 84760594 ECH