Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01210 ATGATGGATCCCCGCGAAGACATCAACAAACCGATAGTACTCATCACGGGGTGCTCCGAGGGAGGCATAGGCCACGCGCTTGCACGCGCCTTCGCAGCCAACAAGTGCGCTGTCGTCGCCACCAGCAGGTCGCGCTCCACCATGGCGGACCTTGAGCACGACACCCGCTTCTTCCTTCAGGAGCTCGACGTCAAGTCCGACGACAGCGTCCGCCGTGCTCTCGACGCCGTCATTGCCCACTTCGGCCGTGTCGACGTTCTTGTCAACAATGCCGGCGTTCAGTGTGTGGGCCCTCTTCCCGAGGTTCCTCTCTCTGCGATTCAGAGCACCTACGAAACCAACGTCTTCGGTGCCTTGAGGATGATTCAGGCTGTTGTTCCTCATATGGCAAAGAGGAAACAGGGTAAGATTGTGAATGTTGGAAGCGTTACGGCTATGGCATCTGGACCTTGGTCTGGCGCATATACTTCGTCCAAAGCTGCCCTTCATTCTTTGACAGATACCCTAAGATTGGAACTTAGCCATTTTGGAATTGATGTTGTCAATGTTGTCCCTGGAGCTATCAAGTCAAATATTGGAAATTCTGCCATAGCTAGCTACGACCACATGCCTGAGTGGGACTTATTCAAGCCTTTTGAAGCCGCAATTCGAGATAGAGCTTATTTTTCTCAGAAAACAAAGTCAACCCCCAATGATGAGTTTGCGAAACACACCGTGGCCGCTATCCTGAAGAAGAAGCCACCAGCGTGGTTCTCCTACGGCCATTACTCTACCGCAATGGCCATCATGTACCATTTGCCGCTGTGTGTTAGGGACTTTATTTTGAAGAAAGCGATGAAATGCTGA 846 0.5189 MMDPREDINKPIVLITGCSEGGIGHALARAFAANKCAVVATSRSRSTMADLEHDTRFFLQELDVKSDDSVRRALDAVIAHFGRVDVLVNNAGVQCVGPLPEVPLSAIQSTYETNVFGALRMIQAVVPHMAKRKQGKIVNVGSVTAMASGPWSGAYTSSKAALHSLTDTLRLELSHFGIDVVNVVPGAIKSNIGNSAIASYDHMPEWDLFKPFEAAIRDRAYFSQKTKSTPNDEFAKHTVAAILKKKPPAWFSYGHYSTAMAIMYHLPLCVRDFILKKAMKC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01210 281 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 142 170 IPR020904 GO:0016491
Arst10g01210 281 Pfam short chain dehydrogenase 12 195 IPR002347 -
Arst10g01210 281 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 184 - -
Arst10g01210 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 IPR002347 -
Arst10g01210 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Arst10g01210 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 IPR002347 -
Arst10g01210 281 CDD 17beta-HSD-like_SDR_c 12 257 - -
Arst10g01210 281 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Arst10g01210 281 PRINTS Glucose/ribitol dehydrogenase family signature 129 145 IPR002347 -
Arst10g01210 281 PRINTS Glucose/ribitol dehydrogenase family signature 176 193 IPR002347 -
Arst10g01210 281 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Arst10g01210 281 PRINTS Glucose/ribitol dehydrogenase family signature 155 174 IPR002347 -
Arst10g01210 281 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 9 261 - -
Arst10g01210 281 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 9 280 - -
Arst10g01210 281 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 271 IPR036291 -
Arst10g01210 281 Gene3D - 11 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01210 Arst-Chr10 15231822 15234461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01210 2 192 Acyl Lipid Metabolism Gene Families AT1G62610 28.922 1.99e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01210 - - aprc:113850568 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01210 10 15231822 15234461 Arst10g01210 10 15231822 15234461 ECH