Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01011 ATGGGAGAAACCGGTATCATTGTCCGGTTCCCTGGAAACTTAGACCCCAGAGCTCAAGAGTTCATACCCACAAACACAACCCACACTCCCTTGCCGCAACTGGCAACCGTCTTCCCCCTTCCCCACCACCCCTACACCGCCCAACCCTCGTATCCACCTTACCCTTACCCTTACGCCCCATCCCTTGGGGTTGGTGTACTTCCCTTTCACGATGCTCAGCTTCCCCACGCCGCCGCCGCCGCCGCCGCCGTTCCATTCCCTCACTTCACCTCCGCCGCATATGCAGCTCCTCCTCCTCCTTTCCCGTCGCCTCACCTGTCCACGTCACCAACCCGGTCGTTGCTCCTGAGTCCCTTACCATCGGACCTGGCGGTTAGCGAGTCCTCACTGAGGCGCGAACTTGAAGTGTTCGGTGACGTCAGAGGGGTCCAGATGGAAGCCCTCCATGACGGAATCGTGACGGTCCATTTTTATGACCTCAGGGACGCCGAAACGGCGCTAACGGCGATTCGACAGCAACACATGCAGCACCAGGAGAGGCTCCGCAACCACTATGCCTCGTTGTTCAAGGCCAGAAGCGCGTTTCCTCTACCGCCACCGCCGCCGGTGGTTTCTCCGCCGGCGCCCGGTCTCATCGCCGGGAGAGCTGTGTGGGCGCAGTACGTTCTCCCGGTTTGCAACGCCGTCCCGGACGGTCAGAACCAAGGCACCGTCGTGGTCTTTAACTTGGACTCGGACGTTTCCGCCGAGAATCTCAAACGCGTTTTTGAGGCTTTCGGTGCAGTAAAGGAACTAAGAGATACACCGTCGAAAAAGAATCAAAGGTTTGTGGAGTTCTATGACGTTAGAGATGCGGCGAAGGCATTGAAAGAAATGGACGGGAAGGAAATTTATGGTAGAAAGGTTGTAATTGAGTTCAGTAGACCCGGTGGTCAAAGCAGAAAGTTCTTCCATTCCCCAGCTTCTAAACAAAAGTCTTTGAACCTGAATAATGTTCCACCGTTCTATGCTTCGAATCATCCTCATCACGTGCAACGCAAAAACTCGCGTCGTTTTGGAAGTTCATGCTGGAACTCTTCATGTTCTACTACATTTCCGCAATTGCCCTTGTGGAAGAGTTCAGGTGGTGGAAGCAAGGGAAGCGTGAACGGGGGTTCGGATTCTGGGTCCGTTGAGGCAGTTGGGAACGCCGTTTCGGAGGAGCAGCTGCAGCGGCGCTCGGACGCTAGTCAGAAGAGGAGTCCCGTTAAAGAAAGCGGCGAGGTCGGTGAAGGAAGCGTAAAACACCACTACCAGCAACATCATCAACAACAACATATAGTAAAGAGTAGACACTGGAAGGGGAAGCAAGGGAAGAAGCACGAGACAAGGTTTCTAATTAGAGAAGACGCCATTGTGGAGTCTAGTTCCAGAGATCCACGAACTACTGTGATGATCAAGAACATTCCCAACAAGTATAGTCAGAAGCTACTATTAAATATGCTGGACAACCATTGCATACACTGCAACGAACAGATTGGCGACGACGAGGACCAACCATTGTCTTCCTACGATTTTGTGTACCTTCCAATTGATTTCAACAACAAGTGCAATGTGGGGTATGGGTTTGTGAACATGACATCTCCCGAAGCCACTCTGCGGCTATATAAGGCGTTCCACCTGCAACATTGGGAGGTATTCAATTCCAGGAAAATTTGTGAAGTTACATATGCAAGAGTCCAGGGTTTGGAAGCTTTGAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCACTACCTGCCGGTGGTGTTTTCACCTCCTCGGGACGGTAAGTCCCTGACGGAGCCACTTCCAATAGTTGGCAACAACAAGAACAACCACCACCACCACCACAGCATTATTATTCCCATGGCCATGATGAACGTTCAAAATGGTGTCCAAAACTCTGATGAGGATGATGATGATTTTGATGATGATGATAGGGCAACAAGAAGTGCTTCTACAATTGCTTGTGAAGACGTGCATAGTAGCCAAAGTGGCGGCGTATGTGATGATGATTGA 2049 0.5149 MGETGIIVRFPGNLDPRAQEFIPTNTTHTPLPQLATVFPLPHHPYTAQPSYPPYPYPYAPSLGVGVLPFHDAQLPHAAAAAAAVPFPHFTSAAYAAPPPPFPSPHLSTSPTRSLLLSPLPSDLAVSESSLRRELEVFGDVRGVQMEALHDGIVTVHFYDLRDAETALTAIRQQHMQHQERLRNHYASLFKARSAFPLPPPPPVVSPPAPGLIAGRAVWAQYVLPVCNAVPDGQNQGTVVVFNLDSDVSAENLKRVFEAFGAVKELRDTPSKKNQRFVEFYDVRDAAKALKEMDGKEIYGRKVVIEFSRPGGQSRKFFHSPASKQKSLNLNNVPPFYASNHPHHVQRKNSRRFGSSCWNSSCSTTFPQLPLWKSSGGGSKGSVNGGSDSGSVEAVGNAVSEEQLQRRSDASQKRSPVKESGEVGEGSVKHHYQQHHQQQHIVKSRHWKGKQGKKHETRFLIREDAIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDDEDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKSLTEPLPIVGNNKNNHHHHHSIIIPMAMMNVQNGVQNSDEDDDDFDDDDRATRSASTIACEDVHSSQSGGVCDDD 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01011 682 Gene3D - 421 578 IPR012677 -
Arst10g01011 682 SMART rrm1_1 237 305 IPR000504 GO:0003723
Arst10g01011 682 SMART rrm1_1 113 182 IPR000504 GO:0003723
Arst10g01011 682 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 309 IPR000504 GO:0003723
Arst10g01011 682 MobiDBLite consensus disorder prediction 368 404 - -
Arst10g01011 682 PANTHER RNA RECOGNITION MOTIF-CONTAINING 98 600 - -
Arst10g01011 682 SUPERFAMILY RNA-binding domain, RBD 98 176 IPR035979 GO:0003676
Arst10g01011 682 MobiDBLite consensus disorder prediction 432 450 - -
Arst10g01011 682 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 188 IPR000504 GO:0003723
Arst10g01011 682 MobiDBLite consensus disorder prediction 405 431 - -
Arst10g01011 682 Gene3D - 230 316 IPR012677 -
Arst10g01011 682 FunFam Terminal EAR1-like 1 422 580 - -
Arst10g01011 682 Coils Coil 160 180 - -
Arst10g01011 682 MobiDBLite consensus disorder prediction 368 450 - -
Arst10g01011 682 CDD RRM3_EAR1_like 474 575 IPR034458 -
Arst10g01011 682 SUPERFAMILY RNA-binding domain, RBD 236 552 IPR035979 GO:0003676
Arst10g01011 682 FunFam Protein MEI2-like 1 235 329 - -
Arst10g01011 682 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 302 IPR000504 GO:0003723
Arst10g01011 682 Pfam RNA recognition motif 2 474 584 IPR007201 -
Arst10g01011 682 MobiDBLite consensus disorder prediction 641 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01011 Arst-Chr10 9923157 9927244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01011 - - adu:107469016 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01011 10 9923157 9927244 Arst10g01011 10 9923157 9927244 ECH