Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3173 ATGGAAATAAAGAAAGTTCTATTAGTTGCTCTATTCCTTGCTTTGGTTCTTGGTATGGCTGAGAGCTTTGATGTACACGACAAGGATTTAGAATCCGAAGAGAGTTTGTGGGATTTATACGAGAGATGGAGGAGCCAGCACACGGTTTCTCGAAGCCTTGATGAGAAGCACAATCGCTTCAACGTGTTCAAAGCCAATGTGATGCATGTCTACAATAGTAATAAACTGGACAAGCCTTACAAGCTGAAGTTGAACAAGTTCGCTGACCTAACAAACCATGAATTCAGGAGCATCTACGCTGGCTCCAAGGTTAATCATCACAGAATGTTGCGAGGCACGCCACGTGGGAATGATACTTTCATGTATGAGAACGTTGATAGGGTTCCTTCTATGGTGGATTGGAGGAAGAAAGGTGCTGTCACTGGTGTAAAGGATCAAGGCCAATGCGGTAGTTGCTGGGCTTTTTCAACTATTGTGGCTGTTGAAGGTATAAACCAAATCAAGACAAATAAGCTAGTGTTCTTATCTGAGCAAGAACTAATAGATTGTGATACTAAAGAGAACCAAGGATGCAATGGTGGGTTGATGGAATACGCGTTCGAGTTCATCAAGAAAAATGGTATAGCAACAGAAAGTAATTACCCTTACAAGGCAAAAGACGAAACCTGTGATGTATCAAAGGTGCACAAGCCAACAGTGTCAATTGATGGTCATGAAAATGTACCCGTAAACAATGAGGCCGCATTGCTCAAAGTTGTTGCCAACCAACCTGTATCTGTAGCCATTGAAGCCGGTGGATCTGACTTCCAGTTTTACTCAGAGGGAGTATTTACCGGAGAATGTGGCACTGATCTGGATCATGGGGTAGCAATTGTGGGCTATGGAACAACTCAAGATGGAACCAAATATTGGACAGTGAAAAACTCATGGGGATCCGAATGGGGAGAGAAGGGTTACATTAGAATGAAAAGGGACATATCTGACAAGAAAGGTCTATGTGGCATAGCAATGGAAGCTTCCTATCCAATCAAAAAGTCATCTAGTAACCCAACAAAACGTTCATCATATCATAAAGACGAGCTTTAA 1086 0.4227 MEIKKVLLVALFLALVLGMAESFDVHDKDLESEESLWDLYERWRSQHTVSRSLDEKHNRFNVFKANVMHVYNSNKLDKPYKLKLNKFADLTNHEFRSIYAGSKVNHHRMLRGTPRGNDTFMYENVDRVPSMVDWRKKGAVTGVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVFLSEQELIDCDTKENQGCNGGLMEYAFEFIKKNGIATESNYPYKAKDETCDVSKVHKPTVSIDGHENVPVNNEAALLKVVANQPVSVAIEAGGSDFQFYSEGVFTGECGTDLDHGVAIVGYGTTQDGTKYWTVKNSWGSEWGEKGYIRMKRDISDKKGLCGIAMEASYPIKKSSSNPTKRSSYHKDEL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3173 361 SUPERFAMILY Cysteine proteinases 34 343 IPR038765 -
Apr9g3173 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Apr9g3173 361 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Apr9g3173 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Apr9g3173 361 Gene3D Cysteine proteinases 15 345 - -
Apr9g3173 361 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
Apr9g3173 361 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Apr9g3173 361 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Apr9g3173 361 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Apr9g3173 361 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Apr9g3173 361 CDD Peptidase_C1A 129 342 IPR039417 -
Apr9g3173 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
Apr9g3173 361 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Apr9g3173 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Apr9g3173 361 SMART Inhibitor_I29_2 40 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3173 Apr-Chr9 38500501 38502840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3173 K16292 - gmx:100806581 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3173 9 38500501 38502840 Apr9g3173 9 38500501 38502840 ECH
Apr9g3173 9 38500501 38502840 Apr1g0249 1 2713188 2715357 PCT