Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3170 ATGTCTTTGGCGTGGCTAGCTTTCCCTATGAACCATGCCTTTGTGTTTTCATACCACACCGTCCTTATAGATGTAGTCAGCGCACTAGTTTATCTCAATGCCCTTTTTGTTCACTCAGAAAAAGACATCAAAGGATCGCAACACCCTACTGTCCCTCCATTCGAATCAAAGAAGCATAAGGAGGACGCTGACCAATCAGATTCCTTGGGTCCAACAAATCTTAGGTGGACCCCGCCACTTCTTTTATTGCCCCACCATCCTACTCCTCGAAGCCTTCTGTATTCGCCACGTGCCCCTCCATCAACAAATCCCAACCACTACTTATGTTCCCGCTCCAGCAACTTCCTTTCGCCACACTCCAATGGTAACACTCAAACCCACGACAATCATCTTCGTTGCATATACTCTCTCAACTTTCAGTCTTTCACCTCCACAATGAACGGTTCCACCACCCTCAAACACCACTGTGTCACTTCCCTCAAAACCCTAACACCCCATATCACCTGCCTCGCGGTCCACCGAAACCTTCTCTACGCCGCATCCATCAACCTAATCAACGTCTTTGACCTCTCCCATTACACTTACATCGACGCATTCAACGATAGCCCCGCGTCAGGGTTCGTCAAGTCCATCGCGTTCAGCGGTTCAAGGGTCTTCACCGCTCATCAAGACTGCAAAATCCGCGTGTGGCTCATCACTCCCTCAAAACGACACCGTCTCCTTACCTCCCTCCCCACCGTAACCGACCGTTTGCGCCGCGGTATCATACCCAAAAACTACGTCAGCGTTCGACGCCACAAGACCAGGCTCTGGATCCAGCATTGCGACACCGTTTCGGGTTTAGCGGTGAACCAGAAGCTTATGTACTCGGTTTCGTGGGACAAAAGCTTTAAGATATGGGACTTGTCACGTTACCAGTGTTTGGAGTCCGTTAAGGCGCACGAAGACGCCATCAACGCCGTTGCTGTTAATGACGACGGCATCGTTTACACGGCGTCCGCGGATGGGTGCATCAAGGTTTGGAAGAGGGATGATGAGGTGAAACGGCACGCGTTGGTGAGCACCGTGGGGAAGCAGAAGTCAACGGTGAATGCGCTTGCATTGGATGGCGACGGCACGGCGTTGTTTTCTGGTGGTTGTGACGGGACGATCTGCCGGTGGGAGAGTAAGTGTGAGGAAAACGACGTCGTGAAGGTGGAAAAGTTAAGGGGTCATAGTGGGGCCATACTGTGTCTGATCCACGTGGCAGGTTTGTTGGTGAGTGGGTCAGCAGATTTGACGGTTAGGATATGGCAACGGGAAAGAGGAGGAGGAAGTAGTGGGTATTGTTGTAGGGTGGTGTTGGAAGGGCACGAGAAACCGGTTAAATCGTTGGTGGCATTTTCGGGTGGTGAAGGTAACTCAAACGGTGTCGTTACGGTCTTCAGTGGAAGCCTTGATGGGAATATTAAGGTGTGGGAGGTGTTTGGTTTTGTTTGA 1479 0.5118 MSLAWLAFPMNHAFVFSYHTVLIDVVSALVYLNALFVHSEKDIKGSQHPTVPPFESKKHKEDADQSDSLGPTNLRWTPPLLLLPHHPTPRSLLYSPRAPPSTNPNHYLCSRSSNFLSPHSNGNTQTHDNHLRCIYSLNFQSFTSTMNGSTTLKHHCVTSLKTLTPHITCLAVHRNLLYAASINLINVFDLSHYTYIDAFNDSPASGFVKSIAFSGSRVFTAHQDCKIRVWLITPSKRHRLLTSLPTVTDRLRRGIIPKNYVSVRRHKTRLWIQHCDTVSGLAVNQKLMYSVSWDKSFKIWDLSRYQCLESVKAHEDAINAVAVNDDGIVYTASADGCIKVWKRDDEVKRHALVSTVGKQKSTVNALALDGDGTALFSGGCDGTICRWESKCEENDVVKVEKLRGHSGAILCLIHVAGLLVSGSADLTVRIWQRERGGGSSGYCCRVVLEGHEKPVKSLVAFSGGEGNSNGVVTVFSGSLDGNIKVWEVFGFV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3170 492 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Apr9g3170 492 SMART WD40_4 264 301 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 304 342 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 192 231 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 349 388 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 153 189 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 395 432 IPR001680 GO:0005515
Apr9g3170 492 SMART WD40_4 441 487 IPR001680 GO:0005515
Apr9g3170 492 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 342 - -
Apr9g3170 492 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 151 488 - -
Apr9g3170 492 Gene3D - 108 251 IPR015943 GO:0005515
Apr9g3170 492 Gene3D - 258 490 IPR015943 GO:0005515
Apr9g3170 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Apr9g3170 492 SUPERFAMILY WD40 repeat-like 153 489 IPR036322 GO:0005515
Apr9g3170 492 MobiDBLite consensus disorder prediction 44 71 - -
Apr9g3170 492 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Apr9g3170 492 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Apr9g3170 492 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Apr9g3170 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 432 IPR001680 GO:0005515
Apr9g3170 492 Pfam WD domain, G-beta repeat 444 486 IPR001680 GO:0005515
Apr9g3170 492 Pfam WD domain, G-beta repeat 401 431 IPR001680 GO:0005515
Apr9g3170 492 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Apr9g3170 492 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 151 488 IPR045182 -
Apr9g3170 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 342 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3170 Apr-Chr9 38465903 38471206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3170 274 492 Acyl Lipid Metabolism Gene Families AT3G18860 23.276 1.62e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3170 - - aprc:113874855 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3170 9 38465903 38471206 Apr9g3170 9 38465903 38471206 ECH