Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3153 ATGAAGAGAGAAGGATTTTATTTTGATGAAGAGACGTATTTCCCAATTTTAGCTGCTTTTAAAAGGAAAAGGATGAAGAAGGACTATGAGGCTCTGACCTGCTTCTACAATCGCAGTATTCAGGAAAATGCAATGCAAAGTGTTGTCAACAAGGTGATTGATATCATTTCAGGGTCTGAATGGGGTGATGAGGTTATAAATAAATTGGCAAATGTTAAAGTTGATTTTTGTGATAATTTTGTAATAAGGGTTTTGAAAAAGCTTGGAAATTGTTCTTTAAAGGCTTACGAGTTCTTTCATTGGGTTAGGAAGCAATCTGGTTATGAGCAAAATACAGTGACATACAATGCAATTGCTAGAGTTCTTGCGCGGAGTGACTCAATGGAGGAGTTTTGGAGTATTATTGAGGAAATGAAGAGTATGGGTTATGAGTTGGATATTGTTACTTACGTAAAAATATCAAGGATGCTTCAAAGGAATAAGATGATAGAGGATGCTGTCAAGCTCTATGAGCTTATGATGGATGGTACATATAAGCCATCCGCCGAGGATTGTAGTCTCCTTTTGAATAGCATCTCTGCAAGTGATAAGCCAAATTTGGATTTAGTTTTCAGAGTTGCTAGGAAATATGAGTCAACAGGGCACGCTCTCTCCAAGCCAATCTATGATGCAATCCACAGGTCTTTGACAGGTGCTGGAAAACTTGATGAAGCTGAAAATATTGTTAATACTATGAGAAATGCTGGCCATGAGCCTGATAACATCACCTACCGTCAAATGGTTTTTGGACTTTGTAAATGA 801 0.3758 MKREGFYFDEETYFPILAAFKRKRMKKDYEALTCFYNRSIQENAMQSVVNKVIDIISGSEWGDEVINKLANVKVDFCDNFVIRVLKKLGNCSLKAYEFFHWVRKQSGYEQNTVTYNAIARVLARSDSMEEFWSIIEEMKSMGYELDIVTYVKISRMLQRNKMIEDAVKLYELMMDGTYKPSAEDCSLLLNSISASDKPNLDLVFRVARKYESTGHALSKPIYDAIHRSLTGAGKLDEAENIVNTMRNAGHEPDNITYRQMVFGLCK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3153 266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Apr9g3153 266 Pfam PPR repeat 113 142 IPR002885 -
Apr9g3153 266 Pfam PPR repeat 222 249 IPR002885 -
Apr9g3153 266 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Apr9g3153 266 Gene3D Tetratricopeptide repeat domain 59 196 IPR011990 GO:0005515
Apr9g3153 266 Gene3D Tetratricopeptide repeat domain 197 266 IPR011990 GO:0005515
Apr9g3153 266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Apr9g3153 266 PANTHER OS01G0970900 PROTEIN 1 266 - -
Apr9g3153 266 PANTHER OS01G0970900 PROTEIN 1 266 IPR044578 GO:0008380
Apr9g3153 266 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3153 Apr-Chr9 38316588 38317388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3153 104 266 Miscellaneous Gene Families AT4G11690 23.313 5.46e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3153 - - aprc:113874852 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3153 9 38316588 38317388 Apr9g3153 9 38316588 38317388 ECH