Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3082 ATGGGGACACTCGACGGCGATTCCGCTACACCCACACTTCGCCTCTTCAACATTCCTCACTCAGCCACCGCCAAAGACCTCCTTCAATTCCTTGAATCCGCGGTGGGTCCCTCCTCCGTCTTCGCCCTCGAAATCTTCACCGACAACAACAACTGGAAGTCTCGCGGCCATGGTCGTGTCCAGTTCGAAACCTTCGACGCCAAGTCACGCGCCCTCTCTCTCTCTCTCCAACAACAACTCCTCTTCCACTCCCACTTCCTCCGATTCTCCGAATCTTCCCAAGACATCATCTTCCGACCCACTCTTCCCCATCACCGCCTCCAAAATGGTATCCTCTATGCCGGTTTTATGGCCGTCGATCACCGCATGAGGGTTCTCGAGACTTGGGAGGGTGTTAGGGGTTGGGTAATGCCACAAAGCCAGAGACTTGAGTTGTGGGTATGGCAGAGTGGTGAGTGTTACAAACTCGAGATTTTGTTTGAGGATATATTGGAGTCTCATGGCTATTGCTCGGGTGAAGATAACAAACTCAATGCTCTTCTCTTGAAGCTGAAATATGGACCGAGGATTTATCAGAAGAAAGCTGGGGCAGGTGTGGCAGCCAAGTTTAAGGCTGACAGGTACCGATTTTGTAAGGATGATTTTGAGTTTCTTTGGGTGCGCACTACTGATTTCTCAGCTATAAAGTCAATTGGGCATTCTACCTCGTTTTGTTGGGACATTGAGGAAGAACATTTTGCTTCCCAAGTTTTTAAATGTTTCCCATTCTACAAGGAAAATTTGAGAGATCTGTCTCTGGAAGATGGGGTGGAATTCTGTTCTTCCACTGAAGCAGTTCCGCTTTTGAAGTGTGGTTCAGATTCTAAGTTACCTTATGAGGTCATTTTCCAATTGAATTCCCTTGTTCATACCCAGAAAATTAGTCTTGCTGCGGTGGATGATGATTTGATGAACTATTTAGGGGATTTGGATGAAGAAACTAGAGCCGCGATATTTCAGAAATTGCACAAGATGAGCTCCACTTGCTATGAGCCTCTCAATTTTGTGAAGACTCAATCGCGTGCGCTGAGTAGCAACGGTGGAAGTCTTCACCAATCGTCGCATAAAAGGTTGACGGATAATAACATAATGAGTTGTCATAGAGCCTTGATTACCCCGACGAAGATTTATTGCCTCGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCACCGTATGCTTCGGACTTCATAAGGATTACTTTTGTTGAAGAGAATTGGAGTAAGCTTCCAACAAATGCAGTGTCAACTAGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTTAAAACTGATATATACAATCGAATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCCAAAAGGTTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTGTTTGCTTCTAATGACAGAGTGAAAGCATCAGATATCAGGGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAGTGTGCAGCGAGGATGGGTCAGTTATTCAGTTCTTCCATGCAAACTTTTGAAGTGCCCCCTCAAGACACAGAGATAATTCCAGATGTGGAAGTTACCACTGATGGTGTAAGCTATTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGCAAGGCAAGTTGCTCAAAAGCTAAAACTGGATCATAGTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTTATTGCTGTTGATCGCCATTCCTTTAGGAAGCTATCATTGCGTAGTAGTATGCTTAAGTTTGAATCTAAAAACAGGATGCTTTGTGTGACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGTGTTTTTGGCAATGCAACAAGAGCAATTGCGTTTGTTAGGAAGGATGCTGACTGATAGTGAGGCAGCTCTGGATGTTTTGGAAAGTTTAAATGGAGCTGATTCAAAAAGCATTTTAGTGAAGATGTTGCATGCATTTAATGAGCCAAATAGTGAGCCTTACCTATTAATGATGCTAAAGGCTTATTATGCATACCAATTATCCGATTTGAGAAGTCGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAATAGGTTGCTTAGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACTGTGACAAAAACTACGGGAAAAAATGGGGATGAAAACTTAAGGAAAGTTGATGGTGATGATGGCACACGTATAATAGTAGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCCGGAGACATCAGAGTCCTTGATGCCATAAACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTCCCACAAAAAGGGCATAGGCCTCATCCGAATGAATGCTCAGGAGGTGATCTTGATGGAGATTTATTTTTCATAAGCTGGGACAAAGATCTGATCCCATGTCAAACTGAGGCTCCAATGGGCTACACTGGAAGTAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTTGATTACATGATTAATGATACCTTGGGTGCTATCTCTACCGCACATCTAGTTCACGCAGACCGTGAACCAGACAAGGCCAAGAGTAGAAAATGTCTGGAGTTGGCAGACCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGTGCGCCTGCTGCAATGCCTAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGATGGACAAGCCTGTGTACATCTCCAAAGGGGTTCTAGGAAAACTTTATCGTGCCATAATTGAGTCAAAATTGCAAGTTAGATCCAGCTTTGAGTGGTCAGAGAAGCTTGCCGAAGAAGCATATGATCATAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGATTGCGTCGAGTCACAGAGAAATGTATGCACAGAAGATGACCACTTTAATGAACTTCTATGGTGCAGAGACCGAAGACGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCTTATTTGCAGCGTGATAACAGAAGATATGGAGATATGAAGGATCGGATTCTGCTCTCAGTAAAGAATCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCCCGCGACTACCAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCCAAGCTATTACCAAGAAAACTCCTGTTTTTTAAGCTTTCCATGGATAGTTGGTGACATTGTATTGCATATTAAGTCTCTAAACAGTAGAGTTCACAGATGA 3372 0.4324 MGTLDGDSATPTLRLFNIPHSATAKDLLQFLESAVGPSSVFALEIFTDNNNWKSRGHGRVQFETFDAKSRALSLSLQQQLLFHSHFLRFSESSQDIIFRPTLPHHRLQNGILYAGFMAVDHRMRVLETWEGVRGWVMPQSQRLELWVWQSGECYKLEILFEDILESHGYCSGEDNKLNALLLKLKYGPRIYQKKAGAGVAAKFKADRYRFCKDDFEFLWVRTTDFSAIKSIGHSTSFCWDIEEEHFASQVFKCFPFYKENLRDLSLEDGVEFCSSTEAVPLLKCGSDSKLPYEVIFQLNSLVHTQKISLAAVDDDLMNYLGDLDEETRAAIFQKLHKMSSTCYEPLNFVKTQSRALSSNGGSLHQSSHKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAPYASDFIRITFVEENWSKLPTNAVSTSVQKGIFSKPFKTDIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDRVKASDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVPPQDTEIIPDVEVTTDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRYGGYKGVIAVDRHSFRKLSLRSSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQQEQLRLLGRMLTDSEAALDVLESLNGADSKSILVKMLHAFNEPNSEPYLLMMLKAYYAYQLSDLRSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVTKTTGKNGDENLRKVDGDDGTRIIVGKVVVTKNPCLHPGDIRVLDAINNEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMGYTGSRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELADLHSMAVDFAKTGAPAAMPRVLKPREFPDFMERMDKPVYISKGVLGKLYRAIIESKLQVRSSFEWSEKLAEEAYDHSLEVNGFEAFLEIASSHREMYAQKMTTLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPRDYQPMASAWYHVTYHPSYYQENSCFLSFPWIVGDIVLHIKSLNSRVHR* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3082 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 8 1120 - -
Apr9g3082 1123 SUPERFAMILY RNA-binding domain, RBD 8 80 IPR035979 GO:0003676
Apr9g3082 1123 Pfam RNA dependent RNA polymerase 384 963 IPR007855 GO:0003968
Apr9g3082 1123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 94 IPR000504 GO:0003723
Apr9g3082 1123 Gene3D - 5 97 IPR012677 -
Apr9g3082 1123 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 1120 IPR007855 GO:0003968
Apr9g3082 1123 CDD RRM_SF 13 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3082 Apr-Chr9 37623847 37628522 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3082 K11699 - gmx:100808274 1894.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3082 9 37623847 37628522 Apr9g3082 9 37623847 37628522 ECH