Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3080 ATGTCATCTCCCAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAATTCAATGTGGAGTTTCATGGTCCAAAAGAAAGTCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTCGAGCTTCCTGATGCTTATCCATATAAATCCCCTTCCATTGGCTTTGTAAACAAAATATTCCATCCAAATGTTGATGAGTTATCTGGCTCTGTGTGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTGATCTTCTCAATGTCTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTACCCAAATGCTTCAGATCCTCTAAATGGTGATGCTGCATCGTTGATGATGAAGGATAAAAAGCTCTATGAACAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTACCAACTCTACAGCTGGTGAGGAGAGTGGAGATGAGGAAGACATCAGTGAAGAAGAAAGTGAATCTAGTGATGATGACATTCCTGGTCATGCTGATCCTTAA 558 0.3907 MSSPSKRREMDVMKLMMSDYTVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYEQKVKEYCERYAKKENITNSTAGEESGDEEDISEEESESSDDDIPGHADP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3080 185 SMART ubc_7 4 148 - -
Apr9g3080 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Apr9g3080 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 185 - -
Apr9g3080 185 MobiDBLite consensus disorder prediction 159 177 - -
Apr9g3080 185 CDD UBCc 7 143 IPR000608 -
Apr9g3080 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Apr9g3080 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Apr9g3080 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
Apr9g3080 185 MobiDBLite consensus disorder prediction 150 185 - -
Apr9g3080 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 185 - -
Apr9g3080 185 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3080 Apr-Chr9 37603414 37611297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3080 4 117 Miscellaneous Gene Families AT3G17000 23.770 2.23e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3080 K10576 - gmx:100527526 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3080 9 37603414 37611297 Apr9g3080 9 37603414 37611297 ECH