Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3076 ATGAGTGAGAATCATGTGAACTGCCGCCACATACACACACATAGACACACTATCTGTCAAATTCAGCAAAACACGGTGTTTCAGAGAGTTTCTTCTTATTGTTGTTGTGGTTGCAGTGTTGGGACCAAATCAAATTCAATGGCTGCAACTGCTTCAAGGTTCATCAAGTGTGTGACCGTTGGGGATGGAGCTGTAGGCAAAACCTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACAGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCGTTAGTGAGTCGCGCCAGCTACGAGAATGTGTCGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCTCCTGGCATTCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAGGACAAGCACTATTTGGCTGATCATCCTGGTTTGGTGCCAGTGACTTCCGAGCAAGGTGAGGAATTGCGTAAACTGGTAGGAGCTACATATTATATTGAGTGCAGCTCCAAAACTCAGCAGAATGTCAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCAAGCCTCCACAAAAACAAGAAAAGAAGAAAAAACCACATCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGACTTAAATAA 771 0.4501 MSENHVNCRHIHTHRHTICQIQQNTVFQRVSSYCCCGCSVGTKSNSMAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVSKKWIPELQHFAPGIPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQEKKKKPHRGCLLNVICGRNIVRLK* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3076 256 SMART ras_sub_4 52 228 - -
Apr9g3076 256 ProSiteProfiles small GTPase Ras family profile. 50 244 IPR001806 GO:0003924|GO:0005525
Apr9g3076 256 Pfam Ras family 56 225 IPR001806 GO:0003924|GO:0005525
Apr9g3076 256 CDD Rop_like 54 226 - -
Apr9g3076 256 PANTHER GTPASE, PUTATIVE-RELATED 47 249 - -
Apr9g3076 256 PANTHER RHO FAMILY GTPASE 47 249 IPR003578 GO:0005525|GO:0007264
Apr9g3076 256 Gene3D - 46 245 IPR027417 -
Apr9g3076 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 225 IPR027417 -
Apr9g3076 256 SMART rho_sub_3 57 228 IPR001806 GO:0003924|GO:0005525
Apr9g3076 256 ProSiteProfiles small GTPase Rho family profile. 48 225 - -
Apr9g3076 256 TIGRFAM small_GTP: small GTP-binding protein domain 55 219 IPR005225 GO:0005525
Apr9g3076 256 PRINTS Transforming protein P21 ras signature 55 76 - -
Apr9g3076 256 PRINTS Transforming protein P21 ras signature 78 94 - -
Apr9g3076 256 PRINTS Transforming protein P21 ras signature 95 117 - -
Apr9g3076 256 PRINTS Transforming protein P21 ras signature 157 170 - -
Apr9g3076 256 PRINTS Transforming protein P21 ras signature 203 225 - -
Apr9g3076 256 ProSiteProfiles small GTPase Rab1 family profile. 50 256 - -
Apr9g3076 256 SMART rab_sub_5 55 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3076 Apr-Chr9 37579078 37584408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3076 55 228 EF-hand Containing Proteins AT5G27540 25.287 1.95e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3076 K04392 - gmx:100806681 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3076 9 37579078 37584408 Apr9g3076 9 37579078 37584408 ECH
Apr9g3076 9 37579078 37584408 Apr1g0843 1 11063050 11067006 PCT