Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3058 ATGGTTTCCGATTCAATCGCCGCCGCTCTAATTCCTTCTGCCGCAAACACTAAGAACCCTGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTATAAGATTGACGCTCGTCGCGAGCAATGGTTATCTCAAGGTGTAGTGAAGAGCAAGGGATGCAAGGACGGAGTGGATGATGACGGCCAAGCGCCGCCATCGCCAGCCTTGAAACACAGCAAACGCTCGTTGGAGCCACTAAACACGAGGCGTAGAGGCGAAGAAGACGATGTGTCGATCCATCATGACAGCGATTCGGAATCGCCGTCTAACCGTACCACTGGCGTTTTATGCGGTAACGATTCCGGCACAAATTTCACCGGCAGCAGCAGTGGTGGCAGTAGCAGCAGCAGCAGCAGTAGCTCTAGCAGCGGCGGGTGCTGTTCGGGGAATATCACTGAAGAAGAAGAAGAAGAAGAAGAAGGGGAAGAAGAAGAAGAAGGTGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCTGATGACAACCATCAAAGCCCTTGTTCGGATTCGCCTCCAGTGGTGGAAACTATTTTGCCATGTGAAGTGAATAGCGGGTCGAGTTTAGAATCTCCTAATTCTAAACCTGAGAGTGGTAGATTAGTTCCTTGGGCTTCTGGTAATAGCCGAGCTTGGAGGGCCGATGATGCTTTTCGCCCTCAGAGTTTACCTAATTTGTCTAAGCAGCACAGTTTGCCGAACCCTGATCGGCGTGGCGGAGGAGGGGTCCCTTGGACTCACACTTCCACGCCATCCTCGTGTCCCATATGCTGTGAGGATCTCGATTTGACGGACTCAAGTTTTTTGCCTTGCCTTTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTTGAGGAGGATGGTCGTTGTCCGGGGTGTAGGAAGCCTTATGAGTGTGAATCTGTCGTTGAGACAGAGGCTAGTGTGCATGGGGGAAGCCTCACTCTTCGGTTGGCTCGTTCGTGTAGCATGATCGACAGGTCTTGA 1050 0.5181 MVSDSIAAALIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGVVKSKGCKDGVDDDGQAPPSPALKHSKRSLEPLNTRRRGEEDDVSIHHDSDSESPSNRTTGVLCGNDSGTNFTGSSSGGSSSSSSSSSSSGGCCSGNITEEEEEEEEGEEEEEGDDGCLDDWEAVADALAADDNHQSPCSDSPPVVETILPCEVNSGSSLESPNSKPESGRLVPWASGNSRAWRADDAFRPQSLPNLSKQHSLPNPDRRGGGGVPWTHTSTPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECESVVETEASVHGGSLTLRLARSCSMIDRS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3058 349 Pfam RING/Ubox like zinc-binding domain 273 319 - -
Apr9g3058 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 347 - -
Apr9g3058 349 MobiDBLite consensus disorder prediction 103 144 - -
Apr9g3058 349 MobiDBLite consensus disorder prediction 238 263 - -
Apr9g3058 349 MobiDBLite consensus disorder prediction 77 102 - -
Apr9g3058 349 CDD mRING-HC-C4C4_CNOT4 273 316 IPR039515 -
Apr9g3058 349 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 11 347 IPR039780 GO:0004842|GO:0030014
Apr9g3058 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 331 IPR013083 -
Apr9g3058 349 ProSiteProfiles Zinc finger RING-type profile. 273 315 IPR001841 -
Apr9g3058 349 SUPERFAMILY RING/U-box 267 323 - -
Apr9g3058 349 MobiDBLite consensus disorder prediction 146 170 - -
Apr9g3058 349 MobiDBLite consensus disorder prediction 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3058 Apr-Chr9 37395002 37396779 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3058 - - var:108330419 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3058 9 37395002 37396779 Apr9g3058 9 37395002 37396779 ECH