Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3055 ATGACCCTTTCACCCTCTCTCTCTGTACCCAACCCTTCCCCTTTCCCCCCAACGCTTCTCAGCCCCCAAACCACCTTCCGCCACCTCTTCTTCACCTTCTCCAAACCCAAACCTCACTGGCGATTCCATTTCCAAGCACGTGCCAATTCCAAGGAACTTATCCCAGTAAACCCGTCGGTGACGGTAGAAAAAGGAAAGTACAGTTACGACGTAGAAACCCTAATCAACAGACTAATCACCTTGGCGCCACGTGGCAGCATCGCCCGTTGCCTCGACCCCTTCAAGAACAAGCTATCCCTCAACGACTTTGCGCTCGTTTTCAAAGAGTTCGCACAGCGCGGCGATTGGCAACGCTCGCTGCGACTCTTCAAATACATGCAGCGTCAGATATGGTGCAAACCCAATGAACATATATACACAATCATGATCACTCTCTTAGGCAGAGAGGGCTTGCTCGATAAGTGCCGCGAGGTGTTCGACGAAATGCCCTCAAACGGCGTCGTTCGCACTGTCTTCGCATACACCGCCATCATCAATGCTTATGGTCGCAACGGTCAGTTTCAGGCATCGCTTGAGCTTCTTGATAGAATGAAGCGGGAGAGGGTTTCTCCCAGTATTTTGACTTATAACACTGTGATTAATGCTTGTGCTAGGGGTGGTTTGGATTGGGAGGGGTTGTTAGGGTTGTTTGCTGAAATGAGGCATGAAGGGGTTCAACCTGATGTTATTACGTATAATACTTTACTTAGTGCGTGTGCTCATAGGGGATTAGGTGATGAGGCTGAAATGGTGTTTAGGACGATGAATGAAGGCGGGGTAGTTCCTGATATTAACACTTATAGTTATGTTGTTCAGACATTTCGTAGGTTGAATAAGCTTGAGAAGGTTTCTGAGCTTCTTAGGGAAATGGAGTCAGGGGGTAATTTGCCCGATATTAGTTCGTATAATGTGCTGTTAGAGGCTTATGCTGAGCTGGGGTCCATTAGAGAGGCAATAGGGGTGTTTCGGCAGATGCAGGCTGCAGGGTGTGTGCCGAATGCGGCCACATATAGTATTTTGTTGAATTTGTATGGGAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAAATGAAAGTGAGCAACACGGACCCTGATGCTGGGACTTATAATATTCTCATACAGGTATTTGGGGAGGGTGGATACTTTAAGGAAGTAGTCACTTTGTTTCATGACATGGTGGAGGAGAACATTGAGCCCAACATGGAGACTTATGAGGGTTTGATATTTGCTTGTGGGAAGGGAGGGCTCTATGAAGATGCAAAGAAAATTTTATCTCATATGAATGAAAAAGGAATAGTGCCAAGTTCCAAGGCTTACACTGGGGTAATTGAAGCGTTTGGGCAGGCTGCACTGTATGAAGAGGCTCTAGTTGCATTTAACACCATGAATGAAGTTGGGAGCAACCCAACTGTGGAGACCTACAGTTCACTTGTTCATGCATGTGCAAGGGGGGGATTGTACAAAGAAGTGGAAGCAATTTTATTCAGGCTGAATGAGTCTGGTTTACAACGGGATGTGCATTTGTTCAATGGTGTGATTGAAGCTTTTCGGCAAGGAGGTCAGCATGAAGAGGCTGTAAAAGCTTATGTTGAGATGGAAAAGGCAAACTGTGAACCAAATGAGCTGACACTTGAAGCAGTGCTAAGCATATACTGCTCTGCTGGGCTTGTTGAAGAGAGTGAGGAGCAGTTCCAAGAAATTAAAGCTTCAGGAATTCTGCCTAGTGTCATGTGCTACTGCATGATGCTAGCTCTTTATGCAAAGAATGACAGGTCAAATGATGCCTATAATCTAATTGATGAGATGATCAGAATGAGGGTGTCAGATATTCATCAAGTGATTGGACAAATGATTAAGGGAGATTTTGATGATGAATCTAATTGGCAGATTGTGGAGTATGTCTTTGACAAACTCAATTCTGAAGGATGTGGATTGGGAATGAGGTTCTACAATGCACTATTAGAAGCTCTTTGGTGGATGTTCCAGAGAGAAAGGGCTGCAAGAGTGCTCAAAGAAGCATCAAAGCGAGGGCTTTTCCCTGAACTTTTTCGCAGTAGTAAACTTGTGTGGTCTGTGGATGTGCACAGTCGGGGTTTCATGGAGAAAAGCACAGATAGCCAAGATTTCCCTATCGCAAAGGCTGCCATTTCATTCTTGCAGGATAACGTTTCATCATCCTTTGCTTTCCCTGGATGGAACAAAGGACGCATTGTTTGTCAGCAGTCACAACTGAGACGAATTCTGTCGGGCACTGAATCATCTTCCAGTAGTAAAAATTTGCATAATTTAATATCTTTAAGTAATACTCCGTTGACTATTCCAGGAGCAATAACATCCAAAGTGCAAAGTGGTAAAGCTAATGATCTTGATTCTAGAACAGATAGTACGAGAACAGAGCTTCTAACTAGTGCAGTTTAG 2466 0.4473 MTLSPSLSVPNPSPFPPTLLSPQTTFRHLFFTFSKPKPHWRFHFQARANSKELIPVNPSVTVEKGKYSYDVETLINRLITLAPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVVRTVFAYTAIINAYGRNGQFQASLELLDRMKRERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGVQPDVITYNTLLSACAHRGLGDEAEMVFRTMNEGGVVPDINTYSYVVQTFRRLNKLEKVSELLREMESGGNLPDISSYNVLLEAYAELGSIREAIGVFRQMQAAGCVPNAATYSILLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENIEPNMETYEGLIFACGKGGLYEDAKKILSHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVAFNTMNEVGSNPTVETYSSLVHACARGGLYKEVEAILFRLNESGLQRDVHLFNGVIEAFRQGGQHEEAVKAYVEMEKANCEPNELTLEAVLSIYCSAGLVEESEEQFQEIKASGILPSVMCYCMMLALYAKNDRSNDAYNLIDEMIRMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLKEASKRGLFPELFRSSKLVWSVDVHSRGFMEKSTDSQDFPIAKAAISFLQDNVSSSFAFPGWNKGRIVCQQSQLRRILSGTESSSSSKNLHNLISLSNTPLTIPGAITSKVQSGKANDLDSRTDSTRTELLTSAV* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3055 821 MobiDBLite consensus disorder prediction 800 821 - -
Apr9g3055 821 Pfam PPR repeat 489 518 IPR002885 -
Apr9g3055 821 Pfam PPR repeat 349 376 IPR002885 -
Apr9g3055 821 Pfam PPR repeat 138 167 IPR002885 -
Apr9g3055 821 Pfam PPR repeat 594 622 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Apr9g3055 821 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 48 785 - -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 173 205 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 419 451 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 138 170 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 384 416 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 524 557 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Apr9g3055 821 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Apr9g3055 821 Pfam PPR repeat family 521 568 IPR002885 -
Apr9g3055 821 Pfam PPR repeat family 380 427 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Apr9g3055 821 Pfam Pentacotripeptide-repeat region of PRORP 179 327 IPR033443 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Apr9g3055 821 Gene3D Tetratricopeptide repeat domain 512 724 IPR011990 GO:0005515
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Apr9g3055 821 Gene3D Tetratricopeptide repeat domain 83 220 IPR011990 GO:0005515
Apr9g3055 821 Gene3D Tetratricopeptide repeat domain 286 393 IPR011990 GO:0005515
Apr9g3055 821 Gene3D Tetratricopeptide repeat domain 394 497 IPR011990 GO:0005515
Apr9g3055 821 Gene3D Tetratricopeptide repeat domain 221 285 IPR011990 GO:0005515
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Apr9g3055 821 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 48 785 - -
Apr9g3055 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 240 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3055 453 742 Miscellaneous Gene Families AT4G11690 20.861 1.39e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3055 - - gmx:100801366 1424.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3055 9 37348681 37356175 Apr9g3055 9 37348681 37356175 ECH